Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC13.7□□□□□ -0.22
VRK1Q99986 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
VRK1Q99986 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 AC063926.2-201ENST00000623766 1308 ntBASIC13.7□□□□□ -0.22
VRK1Q99986 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC13.7□□□□□ -0.22
VRK1Q99986 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC13.7□□□□□ -0.22
VRK1Q99986 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC13.7□□□□□ -0.22
VRK1Q99986 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC13.7□□□□□ -0.22
VRK1Q99986 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC13.7□□□□□ -0.22
VRK1Q99986 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC13.7□□□□□ -0.22
VRK1Q99986 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC13.7□□□□□ -0.22
VRK1Q99986 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 BTBD7P1-201ENST00000447253 1453 ntBASIC13.7□□□□□ -0.22
VRK1Q99986 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC13.7□□□□□ -0.22
VRK1Q99986 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
VRK1Q99986 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 METTL26-204ENST00000397665 558 ntTSL 2 BASIC13.7□□□□□ -0.22
VRK1Q99986 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 GSAP-205ENST00000430584 600 ntTSL 5 BASIC13.7□□□□□ -0.22
VRK1Q99986 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC13.7□□□□□ -0.22
VRK1Q99986 SPTLC1P1-201ENST00000447199 261 ntBASIC13.7□□□□□ -0.22
VRK1Q99986 CFL1-212ENST00000531413 636 ntTSL 3 BASIC13.7□□□□□ -0.22
VRK1Q99986 AC010336.2-201ENST00000564226 506 ntBASIC13.7□□□□□ -0.22
VRK1Q99986 AL132655.2-201ENST00000596276 594 ntBASIC13.7□□□□□ -0.22
VRK1Q99986 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
VRK1Q99986 AC012645.4-201ENST00000610691 1061 ntBASIC13.7□□□□□ -0.22
VRK1Q99986 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC13.7□□□□□ -0.22
VRK1Q99986 AC004840.1-201ENST00000636359 365 ntBASIC13.7□□□□□ -0.22
VRK1Q99986 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
VRK1Q99986 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC13.7□□□□□ -0.22
VRK1Q99986 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC13.7□□□□□ -0.22
VRK1Q99986 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 USP31-203ENST00000567975 2142 ntTSL 2 BASIC13.7□□□□□ -0.22
VRK1Q99986 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC13.7□□□□□ -0.22
VRK1Q99986 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC13.7□□□□□ -0.22
VRK1Q99986 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
VRK1Q99986 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
VRK1Q99986 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.7□□□□□ -0.22
VRK1Q99986 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 AC069224.1-201ENST00000566372 1715 ntBASIC13.7□□□□□ -0.22
VRK1Q99986 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
VRK1Q99986 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC13.7□□□□□ -0.22
VRK1Q99986 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
VRK1Q99986 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VRK1Q99986 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VRK1Q99986 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
VRK1Q99986 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC13.69□□□□□ -0.22
VRK1Q99986 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
VRK1Q99986 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VRK1Q99986 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
VRK1Q99986 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VRK1Q99986 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VRK1Q99986 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VRK1Q99986 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VRK1Q99986 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC13.69□□□□□ -0.22
VRK1Q99986 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VRK1Q99986 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VRK1Q99986 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VRK1Q99986 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
VRK1Q99986 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
VRK1Q99986 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VRK1Q99986 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
VRK1Q99986 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VRK1Q99986 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VRK1Q99986 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VRK1Q99986 COPE-202ENST00000349893 948 ntTSL 2 BASIC13.69□□□□□ -0.22
VRK1Q99986 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
VRK1Q99986 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VRK1Q99986 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC13.69□□□□□ -0.22
VRK1Q99986 GNAQP1-201ENST00000444815 1067 ntBASIC13.69□□□□□ -0.22
VRK1Q99986 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC13.69□□□□□ -0.22
VRK1Q99986 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC13.69□□□□□ -0.22
VRK1Q99986 COQ6-210ENST00000554920 649 ntTSL 3 BASIC13.69□□□□□ -0.22
VRK1Q99986 AC005225.4-201ENST00000557330 545 ntBASIC13.69□□□□□ -0.22
VRK1Q99986 AC104794.3-201ENST00000566840 1248 ntBASIC13.69□□□□□ -0.22
VRK1Q99986 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC13.69□□□□□ -0.22
VRK1Q99986 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
VRK1Q99986 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VRK1Q99986 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VRK1Q99986 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC13.69□□□□□ -0.22
VRK1Q99986 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC13.69□□□□□ -0.22
VRK1Q99986 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms