Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 RPL5P21-201ENST00000404620 815 ntBASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 AL512384.1-201ENST00000406683 331 ntBASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 RN7SL837P-201ENST00000463010 287 ntBASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 AC124283.3-201ENST00000570869 594 ntBASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 AC132938.2-201ENST00000579188 680 ntBASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 AC093813.1-201ENST00000605066 256 ntBASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 AL591163.1-201ENST00000641757 987 ntBASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
PTCHD1Q96NR3 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 ENPP7P5-201ENST00000541031 1031 ntBASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PTCHD1Q96NR3 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
PTCHD1Q96NR3 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
PTCHD1Q96NR3 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PTCHD1Q96NR3 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.08
PTCHD1Q96NR3 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms