Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 FAM8A4P-201ENST00000435433 1213 ntBASIC14.93□□□□□ -0.02
LMX1AQ8TE12 AC245100.3-201ENST00000441281 285 ntBASIC14.93□□□□□ -0.02
LMX1AQ8TE12 CNN2P10-201ENST00000443067 918 ntBASIC14.93□□□□□ -0.02
LMX1AQ8TE12 AL591846.1-201ENST00000451736 433 ntBASIC14.93□□□□□ -0.02
LMX1AQ8TE12 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 ZNF767P-206ENST00000513792 565 ntBASIC14.93□□□□□ -0.02
LMX1AQ8TE12 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 AC104982.3-201ENST00000581995 514 ntBASIC14.93□□□□□ -0.02
LMX1AQ8TE12 CYGB-203ENST00000589145 788 ntTSL 3 BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 AC005695.3-201ENST00000614522 232 ntBASIC14.93□□□□□ -0.02
LMX1AQ8TE12 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 TNRC18P3-201ENST00000441896 2691 ntBASIC14.93□□□□□ -0.02
LMX1AQ8TE12 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 SNX21-203ENST00000372541 771 ntTSL 2 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 RPL5P21-201ENST00000404620 815 ntBASIC14.92□□□□□ -0.02
LMX1AQ8TE12 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 EIF3FP3-201ENST00000434851 1086 ntBASIC14.92□□□□□ -0.02
LMX1AQ8TE12 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 RPSAP36-202ENST00000494591 1261 ntBASIC14.92□□□□□ -0.02
LMX1AQ8TE12 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 AL645728.2-202ENST00000641679 227 ntBASIC14.92□□□□□ -0.02
LMX1AQ8TE12 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 AC067930.6-201ENST00000623257 4947 ntBASIC14.92□□□□□ -0.02
LMX1AQ8TE12 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 GRN-222ENST00000639447 1314 ntTSL 2 BASIC14.92□□□□□ -0.02
LMX1AQ8TE12 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 AC009090.5-201ENST00000624886 2285 ntBASIC14.91□□□□□ -0.02
LMX1AQ8TE12 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms