Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC16.32■□□□□ 0.2
SOX4Q06945 CLUHP2-201ENST00000426660 1303 ntBASIC16.32■□□□□ 0.2
SOX4Q06945 GOLGA2P4-201ENST00000441462 777 ntBASIC16.32■□□□□ 0.2
SOX4Q06945 CNN2P10-201ENST00000443067 918 ntBASIC16.32■□□□□ 0.2
SOX4Q06945 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC16.32■□□□□ 0.2
SOX4Q06945 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC16.32■□□□□ 0.2
SOX4Q06945 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SOX4Q06945 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
SOX4Q06945 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC16.32■□□□□ 0.2
SOX4Q06945 AC105917.1-201ENST00000506637 2539 ntBASIC16.32■□□□□ 0.2
SOX4Q06945 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC16.32■□□□□ 0.2
SOX4Q06945 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX4Q06945 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SOX4Q06945 AC012508.2-201ENST00000567613 1472 ntBASIC16.32■□□□□ 0.2
SOX4Q06945 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX4Q06945 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SOX4Q06945 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SOX4Q06945 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SOX4Q06945 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX4Q06945 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SOX4Q06945 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX4Q06945 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
SOX4Q06945 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SOX4Q06945 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SOX4Q06945 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SOX4Q06945 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SOX4Q06945 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
SOX4Q06945 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX4Q06945 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.31■□□□□ 0.2
SOX4Q06945 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.31■□□□□ 0.2
SOX4Q06945 MIR326-201ENST00000362220 95 ntBASIC16.31■□□□□ 0.2
SOX4Q06945 APOC3-202ENST00000375345 604 ntTSL 5 BASIC16.31■□□□□ 0.2
SOX4Q06945 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC16.31■□□□□ 0.2
SOX4Q06945 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX4Q06945 AL391280.1-201ENST00000506969 1062 ntBASIC16.31■□□□□ 0.2
SOX4Q06945 ACR-203ENST00000529621 708 ntTSL 5 BASIC16.31■□□□□ 0.2
SOX4Q06945 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
SOX4Q06945 AP006547.1-201ENST00000563435 692 ntBASIC16.31■□□□□ 0.2
SOX4Q06945 MIR4525-201ENST00000580000 75 ntBASIC16.31■□□□□ 0.2
SOX4Q06945 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC16.31■□□□□ 0.2
SOX4Q06945 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX4Q06945 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.31■□□□□ 0.2
SOX4Q06945 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.31■□□□□ 0.2
SOX4Q06945 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
SOX4Q06945 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX4Q06945 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX4Q06945 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SOX4Q06945 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC16.31■□□□□ 0.2
SOX4Q06945 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SOX4Q06945 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.3■□□□□ 0.2
SOX4Q06945 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SOX4Q06945 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.3■□□□□ 0.2
SOX4Q06945 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SOX4Q06945 AC126365.1-201ENST00000578585 1514 ntBASIC16.3■□□□□ 0.2
SOX4Q06945 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX4Q06945 REXO1L2P-201ENST00000425429 2069 ntBASIC16.3■□□□□ 0.2
SOX4Q06945 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SOX4Q06945 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX4Q06945 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC16.3■□□□□ 0.2
SOX4Q06945 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX4Q06945 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX4Q06945 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX4Q06945 SNX21-203ENST00000372541 771 ntTSL 2 BASIC16.3■□□□□ 0.2
SOX4Q06945 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SOX4Q06945 FAM8A4P-201ENST00000435433 1213 ntBASIC16.3■□□□□ 0.2
SOX4Q06945 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC16.3■□□□□ 0.2
SOX4Q06945 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
SOX4Q06945 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SOX4Q06945 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
SOX4Q06945 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC16.3■□□□□ 0.2
SOX4Q06945 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC16.3■□□□□ 0.2
SOX4Q06945 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX4Q06945 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC16.3■□□□□ 0.2
SOX4Q06945 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC16.3■□□□□ 0.2
SOX4Q06945 OR10B1P-201ENST00000601666 907 ntBASIC16.3■□□□□ 0.2
SOX4Q06945 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
SOX4Q06945 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC16.3■□□□□ 0.2
SOX4Q06945 AL603764.1-201ENST00000636452 321 ntBASIC16.3■□□□□ 0.2
SOX4Q06945 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SOX4Q06945 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.3■□□□□ 0.2
SOX4Q06945 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC16.3■□□□□ 0.2
SOX4Q06945 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.3■□□□□ 0.2
SOX4Q06945 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC16.3■□□□□ 0.2
SOX4Q06945 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
SOX4Q06945 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SOX4Q06945 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SOX4Q06945 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX4Q06945 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SOX4Q06945 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC16.3■□□□□ 0.2
SOX4Q06945 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX4Q06945 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.3■□□□□ 0.2
SOX4Q06945 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC16.29■□□□□ 0.2
SOX4Q06945 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX4Q06945 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC16.29■□□□□ 0.2
SOX4Q06945 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX4Q06945 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC16.29■□□□□ 0.2
SOX4Q06945 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SOX4Q06945 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
SOX4Q06945 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX4Q06945 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms