Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
SRP54P61011 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SRP54P61011 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
SRP54P61011 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SRP54P61011 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC15.23■□□□□ 0.03
SRP54P61011 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.23■□□□□ 0.03
SRP54P61011 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SRP54P61011 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SRP54P61011 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SRP54P61011 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
SRP54P61011 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC15.22■□□□□ 0.03
SRP54P61011 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 AL513523.2-202ENST00000427283 2040 ntBASIC15.22■□□□□ 0.03
SRP54P61011 AC093525.8-201ENST00000624099 1342 ntBASIC15.22■□□□□ 0.03
SRP54P61011 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.22■□□□□ 0.03
SRP54P61011 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
SRP54P61011 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
SRP54P61011 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.22■□□□□ 0.03
SRP54P61011 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.22■□□□□ 0.03
SRP54P61011 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.22■□□□□ 0.03
SRP54P61011 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 RPL7P3-201ENST00000441388 714 ntBASIC15.22■□□□□ 0.03
SRP54P61011 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
SRP54P61011 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.22■□□□□ 0.03
SRP54P61011 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.22■□□□□ 0.03
SRP54P61011 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.22■□□□□ 0.03
SRP54P61011 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC15.22■□□□□ 0.03
SRP54P61011 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC15.22■□□□□ 0.03
SRP54P61011 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.22■□□□□ 0.03
SRP54P61011 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.22■□□□□ 0.03
SRP54P61011 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.22■□□□□ 0.03
SRP54P61011 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.22■□□□□ 0.03
SRP54P61011 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.22■□□□□ 0.03
SRP54P61011 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.22■□□□□ 0.03
SRP54P61011 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
SRP54P61011 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 AC127383.1-201ENST00000444697 1800 ntBASIC15.22■□□□□ 0.03
SRP54P61011 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SRP54P61011 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SRP54P61011 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.21■□□□□ 0.03
SRP54P61011 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SRP54P61011 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SRP54P61011 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SRP54P61011 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SRP54P61011 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
SRP54P61011 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SRP54P61011 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.21■□□□□ 0.03
SRP54P61011 AC026691.1-201ENST00000602502 2017 ntBASIC15.21■□□□□ 0.03
SRP54P61011 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SRP54P61011 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SRP54P61011 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
SRP54P61011 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
SRP54P61011 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.21■□□□□ 0.03
SRP54P61011 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
SRP54P61011 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.21■□□□□ 0.03
SRP54P61011 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SRP54P61011 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SRP54P61011 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
SRP54P61011 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SRP54P61011 GZMB-202ENST00000382540 816 ntTSL 5 BASIC15.21■□□□□ 0.03
SRP54P61011 PGGT1BP2-201ENST00000398621 1028 ntBASIC15.21■□□□□ 0.03
SRP54P61011 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
SRP54P61011 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SRP54P61011 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC15.21■□□□□ 0.03
SRP54P61011 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC15.21■□□□□ 0.03
SRP54P61011 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.21■□□□□ 0.03
SRP54P61011 BNIP3P42-201ENST00000454982 569 ntBASIC15.21■□□□□ 0.03
SRP54P61011 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.21■□□□□ 0.03
SRP54P61011 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC15.21■□□□□ 0.03
SRP54P61011 KRT18P25-201ENST00000508931 1278 ntBASIC15.21■□□□□ 0.03
SRP54P61011 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC15.21■□□□□ 0.03
SRP54P61011 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC15.21■□□□□ 0.03
SRP54P61011 BNIP3P29-201ENST00000598302 571 ntBASIC15.21■□□□□ 0.03
SRP54P61011 AC011447.5-201ENST00000616168 564 ntBASIC15.21■□□□□ 0.03
SRP54P61011 PAUPAR-201ENST00000630360 2965 ntBASIC15.21■□□□□ 0.03
SRP54P61011 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.21■□□□□ 0.03
SRP54P61011 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.21■□□□□ 0.03
SRP54P61011 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SRP54P61011 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SRP54P61011 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SRP54P61011 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
SRP54P61011 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms