Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIM2P55344 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIM2P55344 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
LIM2P55344 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIM2P55344 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LIM2P55344 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
LIM2P55344 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.61□□□□□ -0.07
LIM2P55344 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LIM2P55344 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
LIM2P55344 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIM2P55344 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.61□□□□□ -0.07
LIM2P55344 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.61□□□□□ -0.07
LIM2P55344 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIM2P55344 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LIM2P55344 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.61□□□□□ -0.07
LIM2P55344 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LIM2P55344 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.61□□□□□ -0.07
LIM2P55344 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
LIM2P55344 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.61□□□□□ -0.07
LIM2P55344 AL442647.2-201ENST00000429864 857 ntBASIC14.61□□□□□ -0.07
LIM2P55344 ELK1P1-201ENST00000485699 580 ntBASIC14.61□□□□□ -0.07
LIM2P55344 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.61□□□□□ -0.07
LIM2P55344 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.61□□□□□ -0.07
LIM2P55344 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.61□□□□□ -0.07
LIM2P55344 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
LIM2P55344 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.61□□□□□ -0.07
LIM2P55344 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIM2P55344 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIM2P55344 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
LIM2P55344 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
LIM2P55344 LINC00528-201ENST00000600723 2160 ntBASIC14.61□□□□□ -0.07
LIM2P55344 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.61□□□□□ -0.07
LIM2P55344 INTS4P2-202ENST00000614726 2019 ntBASIC14.61□□□□□ -0.07
LIM2P55344 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIM2P55344 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIM2P55344 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIM2P55344 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.61□□□□□ -0.07
LIM2P55344 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LIM2P55344 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.61□□□□□ -0.07
LIM2P55344 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
LIM2P55344 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LIM2P55344 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
LIM2P55344 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC14.6□□□□□ -0.07
LIM2P55344 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.6□□□□□ -0.07
LIM2P55344 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.6□□□□□ -0.07
LIM2P55344 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
LIM2P55344 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
LIM2P55344 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC14.6□□□□□ -0.07
LIM2P55344 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.6□□□□□ -0.07
LIM2P55344 AC134915.1-201ENST00000426461 574 ntBASIC14.6□□□□□ -0.07
LIM2P55344 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.6□□□□□ -0.07
LIM2P55344 WASH4P-201ENST00000564273 1246 ntBASIC14.6□□□□□ -0.07
LIM2P55344 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.6□□□□□ -0.07
LIM2P55344 CTBP2P3-201ENST00000585629 1255 ntBASIC14.6□□□□□ -0.07
LIM2P55344 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.6□□□□□ -0.07
LIM2P55344 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
LIM2P55344 AC107373.2-201ENST00000607735 490 ntBASIC14.6□□□□□ -0.07
LIM2P55344 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.6□□□□□ -0.07
LIM2P55344 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
LIM2P55344 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC14.6□□□□□ -0.07
LIM2P55344 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
LIM2P55344 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
LIM2P55344 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 NFIC-211ENST00000641145 8399 ntBASIC14.6□□□□□ -0.07
LIM2P55344 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LIM2P55344 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.59□□□□□ -0.07
LIM2P55344 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.59□□□□□ -0.07
LIM2P55344 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
LIM2P55344 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms