Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
RFX3P48380 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC14.56□□□□□ -0.08
RFX3P48380 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.56□□□□□ -0.08
RFX3P48380 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
RFX3P48380 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC14.56□□□□□ -0.08
RFX3P48380 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.56□□□□□ -0.08
RFX3P48380 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
RFX3P48380 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
RFX3P48380 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
RFX3P48380 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.55□□□□□ -0.08
RFX3P48380 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.55□□□□□ -0.08
RFX3P48380 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
RFX3P48380 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
RFX3P48380 CTBP1-AS2-206ENST00000581398 5652 ntBASIC14.55□□□□□ -0.08
RFX3P48380 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 AC138035.3-201ENST00000622706 2791 ntBASIC14.55□□□□□ -0.08
RFX3P48380 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
RFX3P48380 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
RFX3P48380 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
RFX3P48380 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
RFX3P48380 BASP1P1-201ENST00000430708 665 ntBASIC14.55□□□□□ -0.08
RFX3P48380 KRT18P64-201ENST00000434946 1219 ntBASIC14.55□□□□□ -0.08
RFX3P48380 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.55□□□□□ -0.08
RFX3P48380 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
RFX3P48380 CYMP-203ENST00000474680 1263 ntBASIC14.55□□□□□ -0.08
RFX3P48380 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.55□□□□□ -0.08
RFX3P48380 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.55□□□□□ -0.08
RFX3P48380 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.55□□□□□ -0.08
RFX3P48380 AC027796.2-201ENST00000575326 344 ntBASIC14.55□□□□□ -0.08
RFX3P48380 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 AC005498.2-205ENST00000593218 784 ntBASIC14.55□□□□□ -0.08
RFX3P48380 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 AC087499.5-201ENST00000452760 1342 ntBASIC14.55□□□□□ -0.08
RFX3P48380 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.55□□□□□ -0.08
RFX3P48380 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
RFX3P48380 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
RFX3P48380 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
RFX3P48380 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.55□□□□□ -0.08
RFX3P48380 TMBIM7P-203ENST00000641617 1718 ntBASIC14.55□□□□□ -0.08
RFX3P48380 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
RFX3P48380 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC14.55□□□□□ -0.08
RFX3P48380 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
RFX3P48380 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
RFX3P48380 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
RFX3P48380 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.54□□□□□ -0.08
RFX3P48380 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.54□□□□□ -0.08
RFX3P48380 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.54□□□□□ -0.08
RFX3P48380 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.54□□□□□ -0.08
RFX3P48380 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.54□□□□□ -0.08
RFX3P48380 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.54□□□□□ -0.08
RFX3P48380 SLED1-202ENST00000512051 380 ntBASIC14.54□□□□□ -0.08
RFX3P48380 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.54□□□□□ -0.08
RFX3P48380 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC14.54□□□□□ -0.08
RFX3P48380 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.54□□□□□ -0.08
RFX3P48380 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.54□□□□□ -0.08
RFX3P48380 AL390955.2-201ENST00000603032 514 ntBASIC14.54□□□□□ -0.08
RFX3P48380 AL844908.2-201ENST00000609461 460 ntBASIC14.54□□□□□ -0.08
RFX3P48380 AC074044.1-201ENST00000609673 707 ntBASIC14.54□□□□□ -0.08
RFX3P48380 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
RFX3P48380 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.54□□□□□ -0.08
RFX3P48380 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC14.54□□□□□ -0.08
RFX3P48380 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
RFX3P48380 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
RFX3P48380 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms