Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
PDGFRAP16234 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.17■□□□□ 0.18
PDGFRAP16234 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PDGFRAP16234 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PDGFRAP16234 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PDGFRAP16234 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PDGFRAP16234 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC16.17■□□□□ 0.18
PDGFRAP16234 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
PDGFRAP16234 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
PDGFRAP16234 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.16■□□□□ 0.18
PDGFRAP16234 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PDGFRAP16234 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC16.16■□□□□ 0.18
PDGFRAP16234 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PDGFRAP16234 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
PDGFRAP16234 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
PDGFRAP16234 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
PDGFRAP16234 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PDGFRAP16234 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.16■□□□□ 0.18
PDGFRAP16234 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.16■□□□□ 0.18
PDGFRAP16234 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC16.16■□□□□ 0.18
PDGFRAP16234 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PDGFRAP16234 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
PDGFRAP16234 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PDGFRAP16234 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PDGFRAP16234 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.16■□□□□ 0.18
PDGFRAP16234 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
PDGFRAP16234 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.16■□□□□ 0.18
PDGFRAP16234 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.16■□□□□ 0.18
PDGFRAP16234 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.16■□□□□ 0.18
PDGFRAP16234 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.16■□□□□ 0.18
PDGFRAP16234 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.16■□□□□ 0.18
PDGFRAP16234 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.16■□□□□ 0.18
PDGFRAP16234 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC16.16■□□□□ 0.18
PDGFRAP16234 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.16■□□□□ 0.18
PDGFRAP16234 COQ6-210ENST00000554920 649 ntTSL 3 BASIC16.16■□□□□ 0.18
PDGFRAP16234 WASH4P-201ENST00000564273 1246 ntBASIC16.16■□□□□ 0.18
PDGFRAP16234 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.16■□□□□ 0.18
PDGFRAP16234 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC16.16■□□□□ 0.18
PDGFRAP16234 CECR7-204ENST00000609932 568 ntTSL 2 BASIC16.16■□□□□ 0.18
PDGFRAP16234 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC16.16■□□□□ 0.18
PDGFRAP16234 AC103702.1-201ENST00000548801 2630 ntBASIC16.16■□□□□ 0.18
PDGFRAP16234 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PDGFRAP16234 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PDGFRAP16234 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PDGFRAP16234 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PDGFRAP16234 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC16.16■□□□□ 0.18
PDGFRAP16234 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.16■□□□□ 0.18
PDGFRAP16234 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
PDGFRAP16234 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC16.16■□□□□ 0.18
PDGFRAP16234 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
PDGFRAP16234 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PDGFRAP16234 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PDGFRAP16234 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PDGFRAP16234 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
PDGFRAP16234 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PDGFRAP16234 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PDGFRAP16234 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PDGFRAP16234 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC16.16■□□□□ 0.18
PDGFRAP16234 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PDGFRAP16234 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDGFRAP16234 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PDGFRAP16234 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC16.15■□□□□ 0.18
PDGFRAP16234 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDGFRAP16234 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.15■□□□□ 0.18
PDGFRAP16234 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDGFRAP16234 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC16.15■□□□□ 0.18
PDGFRAP16234 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
PDGFRAP16234 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC16.15■□□□□ 0.18
PDGFRAP16234 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PDGFRAP16234 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDGFRAP16234 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PDGFRAP16234 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDGFRAP16234 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDGFRAP16234 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC16.15■□□□□ 0.18
PDGFRAP16234 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDGFRAP16234 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDGFRAP16234 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDGFRAP16234 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.15■□□□□ 0.18
PDGFRAP16234 DRD5P1-201ENST00000456605 1438 ntBASIC16.15■□□□□ 0.18
PDGFRAP16234 RN7SL692P-201ENST00000464677 288 ntBASIC16.15■□□□□ 0.18
PDGFRAP16234 GAPDHP40-201ENST00000505218 1006 ntBASIC16.15■□□□□ 0.18
PDGFRAP16234 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC16.15■□□□□ 0.18
PDGFRAP16234 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC16.15■□□□□ 0.18
PDGFRAP16234 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.15■□□□□ 0.18
PDGFRAP16234 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PDGFRAP16234 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.15■□□□□ 0.18
PDGFRAP16234 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PDGFRAP16234 AL049840.4-201ENST00000602422 811 ntBASIC16.15■□□□□ 0.18
PDGFRAP16234 AC099568.2-201ENST00000609194 695 ntBASIC16.15■□□□□ 0.18
PDGFRAP16234 AC012645.4-201ENST00000610691 1061 ntBASIC16.15■□□□□ 0.18
PDGFRAP16234 MIR8072-201ENST00000614241 80 ntBASIC16.15■□□□□ 0.18
PDGFRAP16234 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.15■□□□□ 0.18
PDGFRAP16234 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDGFRAP16234 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.15■□□□□ 0.18
PDGFRAP16234 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PDGFRAP16234 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PDGFRAP16234 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDGFRAP16234 ZBTB45P1-201ENST00000452761 1456 ntBASIC16.15■□□□□ 0.18
PDGFRAP16234 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDGFRAP16234 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms