Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VIMP08670 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
VIMP08670 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC15.56■□□□□ 0.08
VIMP08670 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VIMP08670 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
VIMP08670 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
VIMP08670 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
VIMP08670 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
VIMP08670 AC073621.1-201ENST00000392730 636 ntBASIC15.56■□□□□ 0.08
VIMP08670 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VIMP08670 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.56■□□□□ 0.08
VIMP08670 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC15.56■□□□□ 0.08
VIMP08670 KRT18P27-201ENST00000427733 1299 ntBASIC15.56■□□□□ 0.08
VIMP08670 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VIMP08670 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
VIMP08670 AL513480.1-201ENST00000451731 511 ntBASIC15.56■□□□□ 0.08
VIMP08670 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC15.56■□□□□ 0.08
VIMP08670 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC15.56■□□□□ 0.08
VIMP08670 RNF146-204ENST00000476956 884 ntTSL 2 BASIC15.56■□□□□ 0.08
VIMP08670 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.56■□□□□ 0.08
VIMP08670 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
VIMP08670 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC15.56■□□□□ 0.08
VIMP08670 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC15.56■□□□□ 0.08
VIMP08670 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VIMP08670 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VIMP08670 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VIMP08670 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.56■□□□□ 0.08
VIMP08670 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VIMP08670 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VIMP08670 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.56■□□□□ 0.08
VIMP08670 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC15.56■□□□□ 0.08
VIMP08670 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
VIMP08670 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC15.56■□□□□ 0.08
VIMP08670 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC15.56■□□□□ 0.08
VIMP08670 CR383656.2-201ENST00000548656 2254 ntBASIC15.56■□□□□ 0.08
VIMP08670 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
VIMP08670 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VIMP08670 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
VIMP08670 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VIMP08670 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VIMP08670 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
VIMP08670 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VIMP08670 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
VIMP08670 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
VIMP08670 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VIMP08670 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
VIMP08670 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
VIMP08670 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VIMP08670 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
VIMP08670 COL6A4P2-202ENST00000504443 2753 ntBASIC15.55■□□□□ 0.08
VIMP08670 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
VIMP08670 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
VIMP08670 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
VIMP08670 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VIMP08670 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC15.55■□□□□ 0.08
VIMP08670 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC15.55■□□□□ 0.08
VIMP08670 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VIMP08670 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC15.55■□□□□ 0.08
VIMP08670 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VIMP08670 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC15.55■□□□□ 0.08
VIMP08670 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VIMP08670 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VIMP08670 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC15.55■□□□□ 0.08
VIMP08670 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VIMP08670 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.55■□□□□ 0.08
VIMP08670 AL121772.3-201ENST00000610840 674 ntBASIC15.55■□□□□ 0.08
VIMP08670 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VIMP08670 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC15.55■□□□□ 0.08
VIMP08670 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
VIMP08670 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
VIMP08670 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
VIMP08670 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC15.55■□□□□ 0.08
VIMP08670 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
VIMP08670 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC15.55■□□□□ 0.08
VIMP08670 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
VIMP08670 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VIMP08670 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
VIMP08670 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
VIMP08670 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC15.55■□□□□ 0.08
VIMP08670 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
VIMP08670 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VIMP08670 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
VIMP08670 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC15.55■□□□□ 0.08
VIMP08670 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC15.55■□□□□ 0.08
VIMP08670 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VIMP08670 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VIMP08670 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
VIMP08670 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VIMP08670 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VIMP08670 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
VIMP08670 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VIMP08670 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
VIMP08670 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VIMP08670 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC15.54■□□□□ 0.08
VIMP08670 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VIMP08670 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VIMP08670 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VIMP08670 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.54■□□□□ 0.08
VIMP08670 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
VIMP08670 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms