Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA3O43365 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA3O43365 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC12.42□□□□□ -0.42
HOXA3O43365 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA3O43365 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC12.42□□□□□ -0.42
HOXA3O43365 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC12.42□□□□□ -0.42
HOXA3O43365 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA3O43365 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA3O43365 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA3O43365 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC12.42□□□□□ -0.42
HOXA3O43365 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA3O43365 AC026691.1-201ENST00000602502 2017 ntBASIC12.42□□□□□ -0.42
HOXA3O43365 KRT8P44-201ENST00000441609 1350 ntBASIC12.42□□□□□ -0.42
HOXA3O43365 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC12.42□□□□□ -0.42
HOXA3O43365 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
HOXA3O43365 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXA3O43365 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC12.41□□□□□ -0.42
HOXA3O43365 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
HOXA3O43365 BANP-204ENST00000393208 2283 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXA3O43365 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA3O43365 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA3O43365 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
HOXA3O43365 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXA3O43365 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA3O43365 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
HOXA3O43365 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
HOXA3O43365 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA3O43365 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA3O43365 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA3O43365 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXA3O43365 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
HOXA3O43365 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXA3O43365 NME6-203ENST00000415644 849 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXA3O43365 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC12.41□□□□□ -0.42
HOXA3O43365 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC12.41□□□□□ -0.42
HOXA3O43365 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA3O43365 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
HOXA3O43365 AHRR-211ENST00000515206 462 ntTSL 5 BASIC12.41□□□□□ -0.42
HOXA3O43365 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
HOXA3O43365 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
HOXA3O43365 RIT1-205ENST00000539040 919 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXA3O43365 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC12.41□□□□□ -0.42
HOXA3O43365 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC12.41□□□□□ -0.42
HOXA3O43365 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC12.41□□□□□ -0.42
HOXA3O43365 AC023310.1-201ENST00000554836 735 ntBASIC12.41□□□□□ -0.42
HOXA3O43365 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC12.41□□□□□ -0.42
HOXA3O43365 AC025279.2-201ENST00000569730 653 ntBASIC12.41□□□□□ -0.42
HOXA3O43365 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA3O43365 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC12.41□□□□□ -0.42
HOXA3O43365 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXA3O43365 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
HOXA3O43365 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC12.41□□□□□ -0.42
HOXA3O43365 BX539320.1-201ENST00000623759 877 ntBASIC12.41□□□□□ -0.42
HOXA3O43365 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC12.41□□□□□ -0.42
HOXA3O43365 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXA3O43365 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXA3O43365 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC12.41□□□□□ -0.42
HOXA3O43365 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA3O43365 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA3O43365 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA3O43365 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA3O43365 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
HOXA3O43365 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA3O43365 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA3O43365 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA3O43365 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC12.41□□□□□ -0.42
HOXA3O43365 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC12.41□□□□□ -0.42
HOXA3O43365 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA3O43365 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXA3O43365 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA3O43365 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
HOXA3O43365 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
HOXA3O43365 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA3O43365 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXA3O43365 KRT8P35-201ENST00000483942 1338 ntBASIC12.4□□□□□ -0.42
HOXA3O43365 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA3O43365 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC12.4□□□□□ -0.42
HOXA3O43365 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
HOXA3O43365 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA3O43365 MTHFR-217ENST00000641820 1569 ntBASIC12.4□□□□□ -0.42
HOXA3O43365 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA3O43365 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC12.4□□□□□ -0.42
HOXA3O43365 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA3O43365 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA3O43365 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HOXA3O43365 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC12.4□□□□□ -0.42
HOXA3O43365 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC12.4□□□□□ -0.42
HOXA3O43365 RPL13AP20-201ENST00000459725 609 ntBASIC12.4□□□□□ -0.42
HOXA3O43365 AC108725.1-201ENST00000495472 409 ntBASIC12.4□□□□□ -0.42
HOXA3O43365 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC12.4□□□□□ -0.42
HOXA3O43365 DERL2-202ENST00000570848 657 ntTSL 5 BASIC12.4□□□□□ -0.42
HOXA3O43365 RN7SL560P-201ENST00000577943 264 ntBASIC12.4□□□□□ -0.42
HOXA3O43365 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC12.4□□□□□ -0.42
HOXA3O43365 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC12.4□□□□□ -0.42
HOXA3O43365 AC145423.3-201ENST00000615987 467 ntBASIC12.4□□□□□ -0.42
HOXA3O43365 MIR6787-201ENST00000616675 61 ntBASIC12.4□□□□□ -0.42
HOXA3O43365 AC138951.2-201ENST00000623455 1161 ntBASIC12.4□□□□□ -0.42
HOXA3O43365 AC008687.7-202ENST00000637404 953 ntBASIC12.4□□□□□ -0.42
HOXA3O43365 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
HOXA3O43365 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms