Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.21■□□□□ 0.34
MSH4O15457 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.34
MSH4O15457 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC17.21■□□□□ 0.34
MSH4O15457 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC17.2■□□□□ 0.34
MSH4O15457 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC17.2■□□□□ 0.34
MSH4O15457 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
MSH4O15457 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC17.2■□□□□ 0.34
MSH4O15457 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
MSH4O15457 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 ZBTB12BP-201ENST00000314232 1122 ntBASIC17.2■□□□□ 0.34
MSH4O15457 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
MSH4O15457 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
MSH4O15457 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 USB1-202ENST00000423271 1217 ntTSL 2 BASIC17.2■□□□□ 0.34
MSH4O15457 AC016694.1-201ENST00000434179 700 ntBASIC17.2■□□□□ 0.34
MSH4O15457 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 ATP5G2P4-201ENST00000442175 420 ntBASIC17.2■□□□□ 0.34
MSH4O15457 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC17.2■□□□□ 0.34
MSH4O15457 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC17.2■□□□□ 0.34
MSH4O15457 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC17.2■□□□□ 0.34
MSH4O15457 IFT20-216ENST00000588477 774 ntTSL 5 BASIC17.2■□□□□ 0.34
MSH4O15457 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
MSH4O15457 ZEB1-AS1-208ENST00000607166 2503 ntBASIC17.2■□□□□ 0.34
MSH4O15457 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC17.2■□□□□ 0.34
MSH4O15457 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC17.2■□□□□ 0.34
MSH4O15457 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
MSH4O15457 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
MSH4O15457 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MSH4O15457 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
MSH4O15457 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSH4O15457 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC17.19■□□□□ 0.34
MSH4O15457 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC17.19■□□□□ 0.34
MSH4O15457 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC17.19■□□□□ 0.34
MSH4O15457 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSH4O15457 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSH4O15457 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MSH4O15457 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
MSH4O15457 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSH4O15457 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSH4O15457 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSH4O15457 BOLA2P3-201ENST00000404566 256 ntBASIC17.19■□□□□ 0.34
MSH4O15457 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
MSH4O15457 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
MSH4O15457 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSH4O15457 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC17.19■□□□□ 0.34
MSH4O15457 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MSH4O15457 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
MSH4O15457 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MSH4O15457 AC022616.1-201ENST00000518688 554 ntBASIC17.19■□□□□ 0.34
MSH4O15457 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC17.19■□□□□ 0.34
MSH4O15457 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
MSH4O15457 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSH4O15457 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC17.19■□□□□ 0.34
MSH4O15457 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MSH4O15457 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC17.19■□□□□ 0.34
MSH4O15457 DUX4L47-201ENST00000566374 394 ntBASIC17.19■□□□□ 0.34
MSH4O15457 MIR4259-201ENST00000584466 101 ntBASIC17.19■□□□□ 0.34
MSH4O15457 AC017083.2-201ENST00000608069 979 ntBASIC17.19■□□□□ 0.34
MSH4O15457 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSH4O15457 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSH4O15457 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MSH4O15457 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSH4O15457 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
MSH4O15457 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MSH4O15457 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC17.19■□□□□ 0.34
MSH4O15457 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSH4O15457 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSH4O15457 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MSH4O15457 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MSH4O15457 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSH4O15457 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSH4O15457 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
MSH4O15457 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC17.18■□□□□ 0.34
MSH4O15457 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MSH4O15457 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC17.18■□□□□ 0.34
MSH4O15457 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSH4O15457 AL137783.1-201ENST00000623494 1896 ntBASIC17.18■□□□□ 0.34
MSH4O15457 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSH4O15457 WASH3P-207ENST00000560956 1394 ntBASIC17.18■□□□□ 0.34
MSH4O15457 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC17.18■□□□□ 0.34
MSH4O15457 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC17.18■□□□□ 0.34
MSH4O15457 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms