Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 RNU1-114P-201ENST00000365297 166 ntBASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 CNN2P8-201ENST00000421872 913 ntBASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 RN7SL560P-201ENST00000577943 264 ntBASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 AC132938.4-201ENST00000623835 848 ntBASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 AC008687.7-202ENST00000637404 953 ntBASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 AC127383.1-201ENST00000444697 1800 ntBASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC17.79■□□□□ 0.44
CTDP1Q9Y5B0 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 RPS15-201ENST00000233609 534 ntTSL 2 BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 TPM3P8-201ENST00000330554 643 ntBASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 MIR1908-201ENST00000410394 80 ntBASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 AGER-214ENST00000538695 487 ntTSL 2 BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 RPS15-205ENST00000586686 562 ntTSL 5 BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 RPS15-208ENST00000591804 711 ntTSL 5 BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 AC009542.2-202ENST00000619004 1067 ntBASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 LINC02199-201ENST00000506655 2702 ntBASIC17.78■□□□□ 0.44
CTDP1Q9Y5B0 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTDP1Q9Y5B0 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CTDP1Q9Y5B0 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTDP1Q9Y5B0 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CTDP1Q9Y5B0 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTDP1Q9Y5B0 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC17.77■□□□□ 0.44
CTDP1Q9Y5B0 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CTDP1Q9Y5B0 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC17.77■□□□□ 0.44
CTDP1Q9Y5B0 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.77■□□□□ 0.44
CTDP1Q9Y5B0 AHCYP2-201ENST00000430630 1300 ntBASIC17.77■□□□□ 0.44
CTDP1Q9Y5B0 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC17.77■□□□□ 0.44
CTDP1Q9Y5B0 AC010491.1-201ENST00000563101 2797 ntBASIC17.77■□□□□ 0.44
CTDP1Q9Y5B0 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTDP1Q9Y5B0 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CTDP1Q9Y5B0 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTDP1Q9Y5B0 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTDP1Q9Y5B0 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTDP1Q9Y5B0 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms