Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIF3AQ9Y2N7 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 PCDHGB8P-201ENST00000502926 1973 ntBASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 AC087499.5-201ENST00000452760 1342 ntBASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 AJ011931.1-201ENST00000618749 2492 ntBASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 AC138969.3-201ENST00000546612 1459 ntBASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 AC138932.2-201ENST00000548268 1459 ntBASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 AC126755.4-201ENST00000549796 1459 ntBASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 AC104457.1-201ENST00000401024 814 ntBASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 AC107890.1-201ENST00000422478 521 ntBASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 FAM8A3P-201ENST00000427218 844 ntBASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 AC067863.1-201ENST00000494933 530 ntBASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 AC025181.2-201ENST00000606994 802 ntBASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 AL109936.8-201ENST00000641772 604 ntBASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HIF3AQ9Y2N7 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
HIF3AQ9Y2N7 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
HIF3AQ9Y2N7 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC13.96□□□□□ -0.18
HIF3AQ9Y2N7 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC13.96□□□□□ -0.18
HIF3AQ9Y2N7 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
HIF3AQ9Y2N7 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC13.96□□□□□ -0.18
HIF3AQ9Y2N7 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
HIF3AQ9Y2N7 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
HIF3AQ9Y2N7 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
HIF3AQ9Y2N7 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
HIF3AQ9Y2N7 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 AC004449.1-201ENST00000564240 433 ntBASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 LSM12-202ENST00000585388 942 ntTSL 3 BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 AL158211.3-201ENST00000607385 239 ntBASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HIF3AQ9Y2N7 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms