Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 CENPM-206ENST00000407253 818 ntTSL 2 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 AC092580.3-201ENST00000430932 139 ntBASIC12.51□□□□□ -0.41
FOXA2Q9Y261 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 AC093214.1-201ENST00000511688 1107 ntBASIC12.51□□□□□ -0.41
FOXA2Q9Y261 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 AL033527.5-202ENST00000641632 1098 ntBASIC12.51□□□□□ -0.41
FOXA2Q9Y261 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 AC100757.3-201ENST00000622361 1406 ntBASIC12.51□□□□□ -0.41
FOXA2Q9Y261 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 OR2I1P-210ENST00000642037 4691 ntBASIC12.51□□□□□ -0.41
FOXA2Q9Y261 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 AMT-204ENST00000427987 1646 ntTSL 5 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
FOXA2Q9Y261 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 TARDBPP1-201ENST00000442013 1203 ntBASIC12.5□□□□□ -0.41
FOXA2Q9Y261 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 PTK7-212ENST00000476760 902 ntTSL 2 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 RNA5SP421-201ENST00000516864 134 ntBASIC12.5□□□□□ -0.41
FOXA2Q9Y261 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC12.5□□□□□ -0.41
FOXA2Q9Y261 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms