Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
VPS29Q9UBQ0 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 AC104457.1-201ENST00000401024 814 ntBASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 TSSK5P-201ENST00000423978 907 ntBASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 FAM8A3P-201ENST00000427218 844 ntBASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 AC009477.1-201ENST00000452936 217 ntBASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 OR2I1P-209ENST00000641730 5365 ntBASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS29Q9UBQ0 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms