Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 INO80C-210ENST00000590757 595 ntTSL 2 BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 AL158070.2-201ENST00000623713 1621 ntBASIC16.48■□□□□ 0.23
SIX2Q9NPC8 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 PES1-204ENST00000402284 2144 ntTSL 5 BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 SPTLC1P1-201ENST00000447199 261 ntBASIC16.47■□□□□ 0.23
SIX2Q9NPC8 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 AC007686.3-201ENST00000619017 3487 ntBASIC16.47■□□□□ 0.23
SIX2Q9NPC8 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SIX2Q9NPC8 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 AC026748.1-201ENST00000624349 3251 ntBASIC16.46■□□□□ 0.23
SIX2Q9NPC8 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 CD81-207ENST00000481687 890 ntTSL 2 BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms