Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 C1QBPP1-201ENST00000400117 770 ntBASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 SOCS2P1-201ENST00000417727 557 ntBASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 GAPDHP40-201ENST00000505218 1006 ntBASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 AC124283.3-201ENST00000570869 594 ntBASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15.33■□□□□ 0.04
TRIM39Q9HCM9 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 AC005034.1-201ENST00000426657 489 ntBASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 GSAP-205ENST00000430584 600 ntTSL 5 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 AL162726.2-201ENST00000438986 1017 ntBASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 INE1-201ENST00000456273 945 ntBASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM39Q9HCM9 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.31■□□□□ 0.04
TRIM39Q9HCM9 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms