Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
CHMP4AQ9BY43 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC19.58■□□□□ 0.73
CHMP4AQ9BY43 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CHMP4AQ9BY43 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CHMP4AQ9BY43 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC19.58■□□□□ 0.73
CHMP4AQ9BY43 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CHMP4AQ9BY43 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CHMP4AQ9BY43 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 GNRHR2-203ENST00000581100 1187 ntBASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 SERF2-217ENST00000630046 862 ntTSL 5 BASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP4AQ9BY43 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 KRT8P44-201ENST00000441609 1350 ntBASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 MIR658-201ENST00000385210 100 ntBASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 KRT223P-202ENST00000449164 1292 ntBASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 CTBP2P5-201ENST00000454986 1264 ntBASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 RPL8-205ENST00000527914 551 ntTSL 3 BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 KRT90P-201ENST00000549264 1064 ntBASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 AC023310.1-201ENST00000554836 735 ntBASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 DUX4L47-201ENST00000566374 394 ntBASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 AC148477.4-201ENST00000613430 1793 ntBASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC19.57■□□□□ 0.72
CHMP4AQ9BY43 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 AC006001.1-201ENST00000325130 474 ntBASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 TPM3P8-201ENST00000330554 643 ntBASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 STX1A-203ENST00000395155 783 ntTSL 2 BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 AL008721.1-201ENST00000609964 604 ntBASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 RPS24-214ENST00000613865 538 ntTSL 5 BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms