Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC13.71□□□□□ -0.21
SKA3Q8IX90 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SKA3Q8IX90 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SKA3Q8IX90 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SKA3Q8IX90 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
SKA3Q8IX90 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SKA3Q8IX90 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SKA3Q8IX90 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SKA3Q8IX90 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC13.71□□□□□ -0.21
SKA3Q8IX90 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SKA3Q8IX90 FTH1-202ENST00000526640 786 ntTSL 2 BASIC13.71□□□□□ -0.21
SKA3Q8IX90 ARL16-202ENST00000570561 768 ntTSL 2 BASIC13.71□□□□□ -0.21
SKA3Q8IX90 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC13.71□□□□□ -0.21
SKA3Q8IX90 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
SKA3Q8IX90 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
SKA3Q8IX90 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.71□□□□□ -0.21
SKA3Q8IX90 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC13.71□□□□□ -0.21
SKA3Q8IX90 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
SKA3Q8IX90 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
SKA3Q8IX90 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SKA3Q8IX90 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
SKA3Q8IX90 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SKA3Q8IX90 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SKA3Q8IX90 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC13.71□□□□□ -0.22
SKA3Q8IX90 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
SKA3Q8IX90 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
SKA3Q8IX90 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
SKA3Q8IX90 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SKA3Q8IX90 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SKA3Q8IX90 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC13.71□□□□□ -0.22
SKA3Q8IX90 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
SKA3Q8IX90 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.22
SKA3Q8IX90 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.22
SKA3Q8IX90 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
SKA3Q8IX90 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SKA3Q8IX90 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
SKA3Q8IX90 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
SKA3Q8IX90 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
SKA3Q8IX90 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
SKA3Q8IX90 TDG-209ENST00000544861 1387 ntTSL 2 BASIC13.71□□□□□ -0.22
SKA3Q8IX90 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
SKA3Q8IX90 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC13.7□□□□□ -0.22
SKA3Q8IX90 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC13.7□□□□□ -0.22
SKA3Q8IX90 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
SKA3Q8IX90 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
SKA3Q8IX90 STK33-217ENST00000534493 1895 ntTSL 2 BASIC13.7□□□□□ -0.22
SKA3Q8IX90 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 SPDYE19P-201ENST00000338590 713 ntBASIC13.7□□□□□ -0.22
SKA3Q8IX90 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC13.7□□□□□ -0.22
SKA3Q8IX90 AL133267.1-201ENST00000398220 340 ntBASIC13.7□□□□□ -0.22
SKA3Q8IX90 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC13.7□□□□□ -0.22
SKA3Q8IX90 GNAQP1-201ENST00000444815 1067 ntBASIC13.7□□□□□ -0.22
SKA3Q8IX90 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 DOC2GP-202ENST00000514950 1163 ntBASIC13.7□□□□□ -0.22
SKA3Q8IX90 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
SKA3Q8IX90 AC015910.1-201ENST00000579400 975 ntBASIC13.7□□□□□ -0.22
SKA3Q8IX90 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC13.7□□□□□ -0.22
SKA3Q8IX90 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
SKA3Q8IX90 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
SKA3Q8IX90 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
SKA3Q8IX90 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
SKA3Q8IX90 PGR-210ENST00000619228 3038 ntTSL 5 BASIC13.7□□□□□ -0.22
SKA3Q8IX90 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC13.7□□□□□ -0.22
SKA3Q8IX90 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC13.7□□□□□ -0.22
SKA3Q8IX90 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.7□□□□□ -0.22
SKA3Q8IX90 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
SKA3Q8IX90 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC13.7□□□□□ -0.22
SKA3Q8IX90 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC13.7□□□□□ -0.22
SKA3Q8IX90 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SKA3Q8IX90 AC013268.4-201ENST00000637413 2228 ntBASIC13.7□□□□□ -0.22
SKA3Q8IX90 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 AL121723.1-201ENST00000445194 1519 ntBASIC13.69□□□□□ -0.22
SKA3Q8IX90 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
SKA3Q8IX90 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SKA3Q8IX90 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms