Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC20.54■□□□□ 0.88
NPHP3Q7Z494 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 AC008723.1-201ENST00000506922 207 ntBASIC20.53■□□□□ 0.88
NPHP3Q7Z494 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 AC141586.1-203ENST00000567242 366 ntBASIC20.53■□□□□ 0.88
NPHP3Q7Z494 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 AL157813.1-201ENST00000612996 587 ntBASIC20.53■□□□□ 0.88
NPHP3Q7Z494 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 AL596087.1-201ENST00000400979 1969 ntBASIC20.53■□□□□ 0.88
NPHP3Q7Z494 ILF3-AS1-201ENST00000591501 1983 ntBASIC20.53■□□□□ 0.88
NPHP3Q7Z494 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 CA12-203ENST00000422263 2556 ntTSL 2 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 RPL5P21-201ENST00000404620 815 ntBASIC20.53■□□□□ 0.88
NPHP3Q7Z494 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 AL157792.1-201ENST00000488281 530 ntBASIC20.53■□□□□ 0.88
NPHP3Q7Z494 RBM8B-201ENST00000555532 525 ntBASIC20.53■□□□□ 0.88
NPHP3Q7Z494 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 AC005962.1-201ENST00000584100 773 ntBASIC20.53■□□□□ 0.88
NPHP3Q7Z494 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 RPL17P45-201ENST00000586289 509 ntBASIC20.53■□□□□ 0.88
NPHP3Q7Z494 AC009884.2-201ENST00000603110 324 ntBASIC20.53■□□□□ 0.88
NPHP3Q7Z494 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC20.53■□□□□ 0.88
NPHP3Q7Z494 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
NPHP3Q7Z494 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC20.52■□□□□ 0.88
NPHP3Q7Z494 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP3Q7Z494 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP3Q7Z494 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP3Q7Z494 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP3Q7Z494 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP3Q7Z494 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC20.52■□□□□ 0.88
NPHP3Q7Z494 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP3Q7Z494 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP3Q7Z494 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP3Q7Z494 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
NPHP3Q7Z494 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP3Q7Z494 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP3Q7Z494 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
NPHP3Q7Z494 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC20.52■□□□□ 0.88
NPHP3Q7Z494 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP3Q7Z494 AC127383.1-201ENST00000444697 1800 ntBASIC20.52■□□□□ 0.88
NPHP3Q7Z494 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP3Q7Z494 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP3Q7Z494 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.87
NPHP3Q7Z494 AC006058.4-201ENST00000624016 1670 ntBASIC20.52■□□□□ 0.87
NPHP3Q7Z494 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
NPHP3Q7Z494 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
NPHP3Q7Z494 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC20.52■□□□□ 0.87
NPHP3Q7Z494 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
NPHP3Q7Z494 AL512430.1-201ENST00000392575 860 ntBASIC20.52■□□□□ 0.87
NPHP3Q7Z494 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
NPHP3Q7Z494 AC026320.2-201ENST00000434379 478 ntBASIC20.52■□□□□ 0.87
NPHP3Q7Z494 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC20.52■□□□□ 0.87
NPHP3Q7Z494 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC20.52■□□□□ 0.87
NPHP3Q7Z494 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
NPHP3Q7Z494 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms