Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 AC134915.1-201ENST00000426461 574 ntBASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 AC025048.6-201ENST00000634326 1161 ntBASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 AC073347.1-201ENST00000421633 2643 ntBASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 SBF1P1-201ENST00000444527 5631 ntBASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 AC098614.1-201ENST00000368528 745 ntBASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 AL035633.1-201ENST00000406139 838 ntBASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 AC098850.1-201ENST00000419919 790 ntBASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 ELK1P1-201ENST00000485699 580 ntBASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 AL049840.4-201ENST00000602422 811 ntBASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 AC025181.2-201ENST00000606994 802 ntBASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 AC112693.3-201ENST00000624819 1983 ntBASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
NUP54Q7Z3B4 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NUP54Q7Z3B4 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
NUP54Q7Z3B4 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC14.27□□□□□ -0.12
NUP54Q7Z3B4 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
NUP54Q7Z3B4 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
NUP54Q7Z3B4 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.27□□□□□ -0.12
NUP54Q7Z3B4 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
NUP54Q7Z3B4 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NUP54Q7Z3B4 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NUP54Q7Z3B4 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.12
NUP54Q7Z3B4 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
NUP54Q7Z3B4 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
NUP54Q7Z3B4 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.27□□□□□ -0.12
NUP54Q7Z3B4 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NUP54Q7Z3B4 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
NUP54Q7Z3B4 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
NUP54Q7Z3B4 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NUP54Q7Z3B4 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
NUP54Q7Z3B4 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
NUP54Q7Z3B4 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 DGCR5-201ENST00000399539 862 ntBASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms