Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USP39Q53GS9 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USP39Q53GS9 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP39Q53GS9 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USP39Q53GS9 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP39Q53GS9 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP39Q53GS9 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC15.69■□□□□ 0.1
USP39Q53GS9 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP39Q53GS9 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USP39Q53GS9 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP39Q53GS9 TSPY26P-202ENST00000565928 3884 ntBASIC15.69■□□□□ 0.1
USP39Q53GS9 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
USP39Q53GS9 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP39Q53GS9 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP39Q53GS9 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
USP39Q53GS9 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.68■□□□□ 0.1
USP39Q53GS9 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USP39Q53GS9 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP39Q53GS9 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP39Q53GS9 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP39Q53GS9 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.68■□□□□ 0.1
USP39Q53GS9 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP39Q53GS9 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP39Q53GS9 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP39Q53GS9 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP39Q53GS9 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP39Q53GS9 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.68■□□□□ 0.1
USP39Q53GS9 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.68■□□□□ 0.1
USP39Q53GS9 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.68■□□□□ 0.1
USP39Q53GS9 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP39Q53GS9 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP39Q53GS9 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
USP39Q53GS9 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP39Q53GS9 HLA-DPB2-205ENST00000435074 1188 ntBASIC15.68■□□□□ 0.1
USP39Q53GS9 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC15.68■□□□□ 0.1
USP39Q53GS9 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC15.68■□□□□ 0.1
USP39Q53GS9 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USP39Q53GS9 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC15.68■□□□□ 0.1
USP39Q53GS9 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
USP39Q53GS9 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.68■□□□□ 0.1
USP39Q53GS9 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP39Q53GS9 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
USP39Q53GS9 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USP39Q53GS9 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
USP39Q53GS9 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.68■□□□□ 0.1
USP39Q53GS9 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.68■□□□□ 0.1
USP39Q53GS9 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
USP39Q53GS9 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP39Q53GS9 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
USP39Q53GS9 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP39Q53GS9 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
USP39Q53GS9 AC134407.2-201ENST00000625089 1978 ntBASIC15.67■□□□□ 0.1
USP39Q53GS9 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
USP39Q53GS9 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
USP39Q53GS9 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
USP39Q53GS9 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.67■□□□□ 0.1
USP39Q53GS9 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.67■□□□□ 0.1
USP39Q53GS9 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC15.67■□□□□ 0.1
USP39Q53GS9 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
USP39Q53GS9 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.67■□□□□ 0.1
USP39Q53GS9 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
USP39Q53GS9 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
USP39Q53GS9 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
USP39Q53GS9 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
USP39Q53GS9 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.67■□□□□ 0.1
USP39Q53GS9 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
USP39Q53GS9 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
USP39Q53GS9 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
USP39Q53GS9 MIR326-201ENST00000362220 95 ntBASIC15.67■□□□□ 0.1
USP39Q53GS9 KRT18P25-201ENST00000508931 1278 ntBASIC15.67■□□□□ 0.1
USP39Q53GS9 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC15.67■□□□□ 0.1
USP39Q53GS9 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC15.67■□□□□ 0.1
USP39Q53GS9 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
USP39Q53GS9 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC15.67■□□□□ 0.1
USP39Q53GS9 AP001582.1-201ENST00000525856 295 ntBASIC15.67■□□□□ 0.1
USP39Q53GS9 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC15.67■□□□□ 0.1
USP39Q53GS9 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
USP39Q53GS9 HNRNPUP1-201ENST00000554987 333 ntBASIC15.67■□□□□ 0.1
USP39Q53GS9 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC15.67■□□□□ 0.1
USP39Q53GS9 C2orf69P2-201ENST00000562032 1123 ntBASIC15.67■□□□□ 0.1
USP39Q53GS9 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC15.67■□□□□ 0.1
USP39Q53GS9 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC15.67■□□□□ 0.1
USP39Q53GS9 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC15.67■□□□□ 0.1
USP39Q53GS9 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC15.67■□□□□ 0.1
USP39Q53GS9 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.67■□□□□ 0.1
USP39Q53GS9 GNRHR2-203ENST00000581100 1187 ntBASIC15.67■□□□□ 0.1
USP39Q53GS9 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
USP39Q53GS9 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
USP39Q53GS9 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
USP39Q53GS9 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
USP39Q53GS9 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.67■□□□□ 0.1
USP39Q53GS9 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
USP39Q53GS9 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
USP39Q53GS9 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.67■□□□□ 0.1
USP39Q53GS9 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
USP39Q53GS9 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
USP39Q53GS9 DRD5P1-201ENST00000456605 1438 ntBASIC15.67■□□□□ 0.1
USP39Q53GS9 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
USP39Q53GS9 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.67■□□□□ 0.1
USP39Q53GS9 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms