Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 AC242376.1-201ENST00000559033 726 ntBASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 AC005618.3-201ENST00000624928 458 ntBASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 AC002472.3-201ENST00000640124 621 ntBASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC88AQ3V6T2 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 OR2K2-202ENST00000374428 1038 ntBASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 IDS-203ENST00000428056 1213 ntTSL 2 BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 VDAC1P1-201ENST00000439229 848 ntBASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 AC104073.2-201ENST00000453737 312 ntBASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 MESTP3-201ENST00000503460 968 ntBASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 AL603764.1-201ENST00000636452 321 ntBASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 AMT-204ENST00000427987 1646 ntTSL 5 BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 PCDHA1-201ENST00000378133 2726 ntBASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 WARS-232ENST00000556645 2508 ntTSL 5 BASIC18.46■□□□□ 0.55
CCDC88AQ3V6T2 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
CCDC88AQ3V6T2 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC18.46■□□□□ 0.54
CCDC88AQ3V6T2 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC18.46■□□□□ 0.54
CCDC88AQ3V6T2 AP002803.1-201ENST00000528836 498 ntBASIC18.46■□□□□ 0.54
CCDC88AQ3V6T2 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC18.46■□□□□ 0.54
CCDC88AQ3V6T2 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC18.46■□□□□ 0.54
CCDC88AQ3V6T2 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 SHC1P1-201ENST00000425230 1745 ntBASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 CICP13-201ENST00000422015 2789 ntBASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 HLA-K-203ENST00000430151 1046 ntBASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 MEG3_2.1-201ENST00000611456 105 ntBASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CCDC88AQ3V6T2 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.44■□□□□ 0.54
CCDC88AQ3V6T2 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms