Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TDH-203ENST00000531764 1110 ntBASIC14.28□□□□□ -0.12
RNF4P78317 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
RNF4P78317 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.28□□□□□ -0.12
RNF4P78317 MIR5189-201ENST00000577370 114 ntBASIC14.28□□□□□ -0.12
RNF4P78317 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
RNF4P78317 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.28□□□□□ -0.12
RNF4P78317 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.28□□□□□ -0.12
RNF4P78317 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC14.28□□□□□ -0.12
RNF4P78317 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.28□□□□□ -0.12
RNF4P78317 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 BX539320.1-201ENST00000623759 877 ntBASIC14.28□□□□□ -0.12
RNF4P78317 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.28□□□□□ -0.12
RNF4P78317 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.28□□□□□ -0.12
RNF4P78317 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
RNF4P78317 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RNF4P78317 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
RNF4P78317 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.27□□□□□ -0.12
RNF4P78317 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RNF4P78317 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RNF4P78317 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
RNF4P78317 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RNF4P78317 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
RNF4P78317 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14.27□□□□□ -0.12
RNF4P78317 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
RNF4P78317 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
RNF4P78317 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
RNF4P78317 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.27□□□□□ -0.12
RNF4P78317 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RNF4P78317 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RNF4P78317 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
RNF4P78317 FUK-207ENST00000571514 3054 ntTSL 2 BASIC14.27□□□□□ -0.12
RNF4P78317 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
RNF4P78317 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RNF4P78317 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.27□□□□□ -0.12
RNF4P78317 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.27□□□□□ -0.12
RNF4P78317 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RNF4P78317 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
RNF4P78317 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
RNF4P78317 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.27□□□□□ -0.13
RNF4P78317 ACKR1-201ENST00000368121 1240 ntBASIC14.27□□□□□ -0.13
RNF4P78317 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC14.27□□□□□ -0.13
RNF4P78317 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
RNF4P78317 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RNF4P78317 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RNF4P78317 TMEM14DP-201ENST00000422205 345 ntBASIC14.27□□□□□ -0.13
RNF4P78317 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.27□□□□□ -0.13
RNF4P78317 NAA50-208ENST00000497255 789 ntTSL 5 BASIC14.27□□□□□ -0.13
RNF4P78317 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.27□□□□□ -0.13
RNF4P78317 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RNF4P78317 PTP4A1P2-201ENST00000546033 454 ntBASIC14.27□□□□□ -0.13
RNF4P78317 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC14.27□□□□□ -0.13
RNF4P78317 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.27□□□□□ -0.13
RNF4P78317 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.27□□□□□ -0.13
RNF4P78317 AC008735.3-201ENST00000596646 500 ntBASIC14.27□□□□□ -0.13
RNF4P78317 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.27□□□□□ -0.13
RNF4P78317 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.27□□□□□ -0.13
RNF4P78317 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.27□□□□□ -0.13
RNF4P78317 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
RNF4P78317 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.27□□□□□ -0.13
RNF4P78317 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
RNF4P78317 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RNF4P78317 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RNF4P78317 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RNF4P78317 CICP11-201ENST00000434745 2827 ntBASIC14.27□□□□□ -0.13
RNF4P78317 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RNF4P78317 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
RNF4P78317 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RNF4P78317 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.27□□□□□ -0.13
RNF4P78317 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
RNF4P78317 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.27□□□□□ -0.13
RNF4P78317 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.27□□□□□ -0.13
RNF4P78317 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.27□□□□□ -0.13
RNF4P78317 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
RNF4P78317 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RNF4P78317 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.27□□□□□ -0.13
RNF4P78317 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RNF4P78317 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.26□□□□□ -0.13
RNF4P78317 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
RNF4P78317 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
RNF4P78317 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 ABR-203ENST00000536794 2213 ntTSL 2 BASIC14.26□□□□□ -0.13
RNF4P78317 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
RNF4P78317 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
RNF4P78317 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.26□□□□□ -0.13
RNF4P78317 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.26□□□□□ -0.13
RNF4P78317 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RNF4P78317 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms