Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
TPM4P67936 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC17.35■□□□□ 0.37
TPM4P67936 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
TPM4P67936 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 REXO1L2P-201ENST00000425429 2069 ntBASIC17.35■□□□□ 0.37
TPM4P67936 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
TPM4P67936 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.35■□□□□ 0.37
TPM4P67936 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
TPM4P67936 TFAMP1-201ENST00000412727 736 ntBASIC17.35■□□□□ 0.37
TPM4P67936 AL671277.1-201ENST00000429656 993 ntBASIC17.35■□□□□ 0.37
TPM4P67936 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.35■□□□□ 0.37
TPM4P67936 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.35■□□□□ 0.37
TPM4P67936 RN7SL589P-201ENST00000481268 310 ntBASIC17.35■□□□□ 0.37
TPM4P67936 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.35■□□□□ 0.37
TPM4P67936 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC17.35■□□□□ 0.37
TPM4P67936 MAX-210ENST00000555419 765 ntTSL 5 BASIC17.35■□□□□ 0.37
TPM4P67936 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC17.35■□□□□ 0.37
TPM4P67936 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.35■□□□□ 0.37
TPM4P67936 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC17.35■□□□□ 0.37
TPM4P67936 CICP11-201ENST00000434745 2827 ntBASIC17.35■□□□□ 0.37
TPM4P67936 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
TPM4P67936 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
TPM4P67936 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.35■□□□□ 0.37
TPM4P67936 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.35■□□□□ 0.37
TPM4P67936 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.35■□□□□ 0.37
TPM4P67936 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 MPI-203ENST00000535694 1523 ntTSL 2 BASIC17.35■□□□□ 0.37
TPM4P67936 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC17.35■□□□□ 0.37
TPM4P67936 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC17.35■□□□□ 0.37
TPM4P67936 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC17.35■□□□□ 0.37
TPM4P67936 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
TPM4P67936 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC17.35■□□□□ 0.37
TPM4P67936 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TPM4P67936 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
TPM4P67936 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
TPM4P67936 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC17.34■□□□□ 0.37
TPM4P67936 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC17.34■□□□□ 0.37
TPM4P67936 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
TPM4P67936 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM4P67936 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TPM4P67936 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM4P67936 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TPM4P67936 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM4P67936 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM4P67936 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM4P67936 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM4P67936 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
TPM4P67936 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.34■□□□□ 0.37
TPM4P67936 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TPM4P67936 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.34■□□□□ 0.37
TPM4P67936 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM4P67936 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM4P67936 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM4P67936 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC17.34■□□□□ 0.37
TPM4P67936 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM4P67936 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC17.34■□□□□ 0.37
TPM4P67936 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.34■□□□□ 0.37
TPM4P67936 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM4P67936 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TPM4P67936 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TPM4P67936 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM4P67936 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
TPM4P67936 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.34■□□□□ 0.37
TPM4P67936 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TPM4P67936 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC17.34■□□□□ 0.37
TPM4P67936 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
TPM4P67936 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TPM4P67936 USP35-204ENST00000530267 2419 ntTSL 2 BASIC17.33■□□□□ 0.37
TPM4P67936 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
TPM4P67936 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TPM4P67936 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TPM4P67936 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TPM4P67936 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TPM4P67936 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
TPM4P67936 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC17.33■□□□□ 0.37
TPM4P67936 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TPM4P67936 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.33■□□□□ 0.37
TPM4P67936 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
TPM4P67936 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TPM4P67936 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms