Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC18.86■□□□□ 0.61
COL5A3P25940 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC18.86■□□□□ 0.61
COL5A3P25940 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC18.86■□□□□ 0.61
COL5A3P25940 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC18.86■□□□□ 0.61
COL5A3P25940 AC009145.4-201ENST00000625119 1294 ntBASIC18.86■□□□□ 0.61
COL5A3P25940 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A3P25940 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL5A3P25940 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL5A3P25940 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC18.85■□□□□ 0.61
COL5A3P25940 STK26-204ENST00000481105 1835 ntTSL 2 BASIC18.85■□□□□ 0.61
COL5A3P25940 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL5A3P25940 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC18.85■□□□□ 0.61
COL5A3P25940 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL5A3P25940 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL5A3P25940 MBP-201ENST00000354542 575 ntTSL 2 BASIC18.85■□□□□ 0.61
COL5A3P25940 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL5A3P25940 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL5A3P25940 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL5A3P25940 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
COL5A3P25940 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
COL5A3P25940 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.85■□□□□ 0.61
COL5A3P25940 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
COL5A3P25940 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC18.85■□□□□ 0.61
COL5A3P25940 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC18.85■□□□□ 0.61
COL5A3P25940 KRT18P9-201ENST00000604826 1300 ntBASIC18.85■□□□□ 0.61
COL5A3P25940 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC18.85■□□□□ 0.61
COL5A3P25940 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC18.85■□□□□ 0.61
COL5A3P25940 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC18.85■□□□□ 0.61
COL5A3P25940 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
COL5A3P25940 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
COL5A3P25940 TMBIM7P-202ENST00000641474 1516 ntBASIC18.85■□□□□ 0.61
COL5A3P25940 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL5A3P25940 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
COL5A3P25940 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC18.84■□□□□ 0.61
COL5A3P25940 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL5A3P25940 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
COL5A3P25940 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL5A3P25940 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL5A3P25940 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL5A3P25940 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL5A3P25940 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL5A3P25940 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC18.84■□□□□ 0.61
COL5A3P25940 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL5A3P25940 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL5A3P25940 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL5A3P25940 AC097065.1-201ENST00000425737 517 ntBASIC18.84■□□□□ 0.61
COL5A3P25940 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC18.84■□□□□ 0.61
COL5A3P25940 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL5A3P25940 AL627422.1-201ENST00000434104 580 ntBASIC18.84■□□□□ 0.61
COL5A3P25940 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
COL5A3P25940 AC079112.1-201ENST00000454972 939 ntBASIC18.84■□□□□ 0.61
COL5A3P25940 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC18.84■□□□□ 0.61
COL5A3P25940 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL5A3P25940 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC18.84■□□□□ 0.61
COL5A3P25940 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL5A3P25940 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC18.84■□□□□ 0.61
COL5A3P25940 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
COL5A3P25940 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC18.84■□□□□ 0.61
COL5A3P25940 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC18.84■□□□□ 0.61
COL5A3P25940 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.84■□□□□ 0.61
COL5A3P25940 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC18.84■□□□□ 0.61
COL5A3P25940 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC18.84■□□□□ 0.61
COL5A3P25940 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL5A3P25940 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC18.84■□□□□ 0.61
COL5A3P25940 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
COL5A3P25940 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC18.84■□□□□ 0.61
COL5A3P25940 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC18.83■□□□□ 0.61
COL5A3P25940 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL5A3P25940 CHCHD2P9-201ENST00000461726 456 ntBASIC18.83■□□□□ 0.61
COL5A3P25940 AC130709.1-201ENST00000484779 1212 ntBASIC18.83■□□□□ 0.61
COL5A3P25940 AC027237.1-201ENST00000560942 655 ntBASIC18.83■□□□□ 0.61
COL5A3P25940 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL5A3P25940 AC005041.3-201ENST00000606287 649 ntBASIC18.83■□□□□ 0.61
COL5A3P25940 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL5A3P25940 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC18.83■□□□□ 0.61
COL5A3P25940 AC013726.1-201ENST00000563747 2285 ntBASIC18.83■□□□□ 0.61
COL5A3P25940 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL5A3P25940 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL5A3P25940 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
COL5A3P25940 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC18.83■□□□□ 0.6
COL5A3P25940 AC112693.3-201ENST00000624819 1983 ntBASIC18.83■□□□□ 0.6
COL5A3P25940 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
COL5A3P25940 KRT8P28-201ENST00000433288 1390 ntBASIC18.83■□□□□ 0.6
COL5A3P25940 STRN-202ENST00000379213 2254 ntTSL 5 BASIC18.83■□□□□ 0.6
COL5A3P25940 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.83■□□□□ 0.6
COL5A3P25940 SALL4P5-201ENST00000419001 1760 ntBASIC18.83■□□□□ 0.6
COL5A3P25940 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC18.83■□□□□ 0.6
COL5A3P25940 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL5A3P25940 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
COL5A3P25940 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC18.83■□□□□ 0.6
COL5A3P25940 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC18.83■□□□□ 0.6
COL5A3P25940 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC18.83■□□□□ 0.6
COL5A3P25940 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL5A3P25940 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC18.83■□□□□ 0.6
COL5A3P25940 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL5A3P25940 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
COL5A3P25940 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL5A3P25940 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL5A3P25940 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL5A3P25940 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms