Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BDNFP23560 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BDNFP23560 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
BDNFP23560 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BDNFP23560 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.22■□□□□ 0.19
BDNFP23560 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
BDNFP23560 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
BDNFP23560 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
BDNFP23560 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
BDNFP23560 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
BDNFP23560 NME2-201ENST00000393183 568 ntTSL 2 BASIC16.22■□□□□ 0.19
BDNFP23560 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC16.22■□□□□ 0.19
BDNFP23560 NUS1P3-201ENST00000423502 862 ntBASIC16.22■□□□□ 0.19
BDNFP23560 AC016694.1-201ENST00000434179 700 ntBASIC16.22■□□□□ 0.19
BDNFP23560 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
BDNFP23560 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.22■□□□□ 0.19
BDNFP23560 AP005482.1-201ENST00000563722 1273 ntBASIC16.22■□□□□ 0.19
BDNFP23560 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC16.22■□□□□ 0.19
BDNFP23560 NAA38-206ENST00000576384 424 ntTSL 2 BASIC16.22■□□□□ 0.19
BDNFP23560 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC16.22■□□□□ 0.19
BDNFP23560 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC16.22■□□□□ 0.19
BDNFP23560 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC16.22■□□□□ 0.19
BDNFP23560 AC133552.6-201ENST00000613406 534 ntBASIC16.22■□□□□ 0.19
BDNFP23560 AC145423.3-201ENST00000615987 467 ntBASIC16.22■□□□□ 0.19
BDNFP23560 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC16.22■□□□□ 0.19
BDNFP23560 COX11-210ENST00000639671 696 ntBASIC16.22■□□□□ 0.19
BDNFP23560 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.22■□□□□ 0.19
BDNFP23560 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
BDNFP23560 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
BDNFP23560 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.22■□□□□ 0.19
BDNFP23560 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
BDNFP23560 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BDNFP23560 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
BDNFP23560 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
BDNFP23560 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
BDNFP23560 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BDNFP23560 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BDNFP23560 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
BDNFP23560 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.22■□□□□ 0.19
BDNFP23560 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 SSR4P1-203ENST00000599569 2260 ntBASIC16.21■□□□□ 0.19
BDNFP23560 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
BDNFP23560 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.21■□□□□ 0.19
BDNFP23560 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 ZBTB12BP-201ENST00000314232 1122 ntBASIC16.21■□□□□ 0.19
BDNFP23560 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC16.21■□□□□ 0.19
BDNFP23560 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC16.21■□□□□ 0.19
BDNFP23560 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC16.21■□□□□ 0.19
BDNFP23560 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC16.21■□□□□ 0.19
BDNFP23560 KRT223P-202ENST00000449164 1292 ntBASIC16.21■□□□□ 0.19
BDNFP23560 AC114812.1-204ENST00000449669 728 ntBASIC16.21■□□□□ 0.19
BDNFP23560 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.21■□□□□ 0.19
BDNFP23560 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC16.21■□□□□ 0.19
BDNFP23560 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC16.21■□□□□ 0.19
BDNFP23560 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
BDNFP23560 PRSS30P-206ENST00000641773 873 ntBASIC16.21■□□□□ 0.19
BDNFP23560 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
BDNFP23560 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.21■□□□□ 0.19
BDNFP23560 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.21■□□□□ 0.19
BDNFP23560 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
BDNFP23560 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.21■□□□□ 0.19
BDNFP23560 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
BDNFP23560 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
BDNFP23560 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BDNFP23560 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BDNFP23560 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC16.2■□□□□ 0.18
BDNFP23560 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
BDNFP23560 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
BDNFP23560 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BDNFP23560 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
BDNFP23560 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
BDNFP23560 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BDNFP23560 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.2■□□□□ 0.18
BDNFP23560 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC16.2■□□□□ 0.18
BDNFP23560 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
BDNFP23560 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BDNFP23560 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
BDNFP23560 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
BDNFP23560 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BDNFP23560 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms