Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.1
COL5A1P20908 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
COL5A1P20908 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
COL5A1P20908 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.1
COL5A1P20908 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
COL5A1P20908 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
COL5A1P20908 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
COL5A1P20908 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.46□□□□□ -0.1
COL5A1P20908 AL157414.3-201ENST00000624276 1954 ntBASIC14.46□□□□□ -0.1
COL5A1P20908 RPL18P13-201ENST00000478088 569 ntBASIC14.45□□□□□ -0.1
COL5A1P20908 RN7SL67P-201ENST00000492147 296 ntBASIC14.45□□□□□ -0.1
COL5A1P20908 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC14.45□□□□□ -0.1
COL5A1P20908 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
COL5A1P20908 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC14.45□□□□□ -0.1
COL5A1P20908 AC005962.1-201ENST00000584100 773 ntBASIC14.45□□□□□ -0.1
COL5A1P20908 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC14.45□□□□□ -0.1
COL5A1P20908 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.45□□□□□ -0.1
COL5A1P20908 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.45□□□□□ -0.1
COL5A1P20908 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC14.45□□□□□ -0.1
COL5A1P20908 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
COL5A1P20908 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL5A1P20908 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL5A1P20908 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL5A1P20908 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL5A1P20908 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
COL5A1P20908 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL5A1P20908 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
COL5A1P20908 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL5A1P20908 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC14.45□□□□□ -0.1
COL5A1P20908 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.45□□□□□ -0.1
COL5A1P20908 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
COL5A1P20908 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL5A1P20908 REXO1L5P-201ENST00000622260 2098 ntBASIC14.45□□□□□ -0.1
COL5A1P20908 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
COL5A1P20908 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL5A1P20908 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC14.45□□□□□ -0.1
COL5A1P20908 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL5A1P20908 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL5A1P20908 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL5A1P20908 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL5A1P20908 CMC1-204ENST00000423894 549 ntTSL 2 BASIC14.45□□□□□ -0.1
COL5A1P20908 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.45□□□□□ -0.1
COL5A1P20908 AC078875.1-201ENST00000431907 724 ntBASIC14.45□□□□□ -0.1
COL5A1P20908 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC14.45□□□□□ -0.1
COL5A1P20908 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC14.45□□□□□ -0.1
COL5A1P20908 PAM16-211ENST00000575848 518 ntTSL 3 BASIC14.45□□□□□ -0.1
COL5A1P20908 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
COL5A1P20908 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
COL5A1P20908 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL5A1P20908 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL5A1P20908 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL5A1P20908 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
COL5A1P20908 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
COL5A1P20908 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
COL5A1P20908 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL5A1P20908 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.45□□□□□ -0.1
COL5A1P20908 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL5A1P20908 MBLAC2-202ENST00000514906 1936 ntBASIC14.45□□□□□ -0.1
COL5A1P20908 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.45□□□□□ -0.1
COL5A1P20908 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL5A1P20908 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL5A1P20908 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
COL5A1P20908 TBC1D3J-201ENST00000620719 1426 ntBASIC14.45□□□□□ -0.1
COL5A1P20908 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.45□□□□□ -0.1
COL5A1P20908 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.44□□□□□ -0.1
COL5A1P20908 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL5A1P20908 MST1L-201ENST00000442552 2185 ntBASIC14.44□□□□□ -0.1
COL5A1P20908 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
COL5A1P20908 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL5A1P20908 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL5A1P20908 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL5A1P20908 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC14.44□□□□□ -0.1
COL5A1P20908 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL5A1P20908 AC020658.6-201ENST00000623564 1870 ntBASIC14.44□□□□□ -0.1
COL5A1P20908 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
COL5A1P20908 AC092850.2-201ENST00000623821 2697 ntBASIC14.44□□□□□ -0.1
COL5A1P20908 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.44□□□□□ -0.1
COL5A1P20908 AMT-239ENST00000636865 1914 ntTSL 5 BASIC14.44□□□□□ -0.1
COL5A1P20908 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL5A1P20908 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
COL5A1P20908 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL5A1P20908 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC14.44□□□□□ -0.1
COL5A1P20908 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL5A1P20908 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL5A1P20908 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC14.44□□□□□ -0.1
COL5A1P20908 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC14.44□□□□□ -0.1
COL5A1P20908 TLE1P1-201ENST00000422965 589 ntBASIC14.44□□□□□ -0.1
COL5A1P20908 CTBP2P4-201ENST00000513884 920 ntBASIC14.44□□□□□ -0.1
COL5A1P20908 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC14.44□□□□□ -0.1
COL5A1P20908 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC14.44□□□□□ -0.1
COL5A1P20908 AC008825.2-201ENST00000603374 718 ntBASIC14.44□□□□□ -0.1
COL5A1P20908 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
COL5A1P20908 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC14.44□□□□□ -0.1
COL5A1P20908 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL5A1P20908 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL5A1P20908 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
COL5A1P20908 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
COL5A1P20908 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL5A1P20908 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL5A1P20908 CICP13-201ENST00000422015 2789 ntBASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms