Protein–RNA interactions for Protein: P16619

CCL3L1, C-C motif chemokine 3-like 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL3L1P16619 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
CCL3L1P16619 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL3L1P16619 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CCL3L1P16619 GALT-202ENST00000450095 1280 ntTSL 2 BASIC12.74□□□□□ -0.37
CCL3L1P16619 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC12.74□□□□□ -0.37
CCL3L1P16619 ELK1P1-201ENST00000485699 580 ntBASIC12.74□□□□□ -0.37
CCL3L1P16619 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC12.74□□□□□ -0.37
CCL3L1P16619 AC092552.1-201ENST00000547243 906 ntBASIC12.74□□□□□ -0.37
CCL3L1P16619 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC12.74□□□□□ -0.37
CCL3L1P16619 COX11-202ENST00000571584 1108 ntTSL 2 BASIC12.74□□□□□ -0.37
CCL3L1P16619 SPDYE22P-201ENST00000582158 798 ntBASIC12.74□□□□□ -0.37
CCL3L1P16619 CTBP2P3-201ENST00000585629 1255 ntBASIC12.74□□□□□ -0.37
CCL3L1P16619 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
CCL3L1P16619 BRI3BPP1-201ENST00000594224 787 ntBASIC12.74□□□□□ -0.37
CCL3L1P16619 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC12.74□□□□□ -0.37
CCL3L1P16619 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC12.74□□□□□ -0.37
CCL3L1P16619 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CCL3L1P16619 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC12.74□□□□□ -0.37
CCL3L1P16619 AC107373.2-201ENST00000607735 490 ntBASIC12.74□□□□□ -0.37
CCL3L1P16619 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL3L1P16619 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL3L1P16619 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC12.74□□□□□ -0.37
CCL3L1P16619 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
CCL3L1P16619 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL3L1P16619 AC006486.2-201ENST00000624246 2199 ntBASIC12.74□□□□□ -0.37
CCL3L1P16619 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC12.74□□□□□ -0.37
CCL3L1P16619 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL3L1P16619 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL3L1P16619 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL3L1P16619 INTS4P2-202ENST00000614726 2019 ntBASIC12.74□□□□□ -0.37
CCL3L1P16619 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL3L1P16619 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL3L1P16619 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL3L1P16619 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CCL3L1P16619 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL3L1P16619 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL3L1P16619 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC12.74□□□□□ -0.37
CCL3L1P16619 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC12.73□□□□□ -0.37
CCL3L1P16619 ZEB1-AS1-208ENST00000607166 2503 ntBASIC12.73□□□□□ -0.37
CCL3L1P16619 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC12.73□□□□□ -0.37
CCL3L1P16619 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC12.73□□□□□ -0.37
CCL3L1P16619 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC12.73□□□□□ -0.37
CCL3L1P16619 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
CCL3L1P16619 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC12.73□□□□□ -0.37
CCL3L1P16619 AC126365.1-201ENST00000578585 1514 ntBASIC12.73□□□□□ -0.37
CCL3L1P16619 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
CCL3L1P16619 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 DRD5P1-201ENST00000456605 1438 ntBASIC12.73□□□□□ -0.37
CCL3L1P16619 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 DGCR5-201ENST00000399539 862 ntBASIC12.73□□□□□ -0.37
CCL3L1P16619 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC12.73□□□□□ -0.37
CCL3L1P16619 RPL13AP25-201ENST00000484130 612 ntBASIC12.73□□□□□ -0.37
CCL3L1P16619 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC12.73□□□□□ -0.37
CCL3L1P16619 TP53TG3HP-202ENST00000569755 579 ntBASIC12.73□□□□□ -0.37
CCL3L1P16619 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC12.73□□□□□ -0.37
CCL3L1P16619 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC12.73□□□□□ -0.37
CCL3L1P16619 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC12.73□□□□□ -0.37
CCL3L1P16619 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC12.73□□□□□ -0.37
CCL3L1P16619 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC12.73□□□□□ -0.37
CCL3L1P16619 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC12.73□□□□□ -0.37
CCL3L1P16619 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
CCL3L1P16619 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC12.73□□□□□ -0.37
CCL3L1P16619 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL3L1P16619 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 AMT-232ENST00000636199 1546 ntTSL 5 BASIC12.72□□□□□ -0.37
CCL3L1P16619 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC12.72□□□□□ -0.37
CCL3L1P16619 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC12.72□□□□□ -0.37
CCL3L1P16619 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
CCL3L1P16619 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC12.72□□□□□ -0.37
CCL3L1P16619 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC12.72□□□□□ -0.37
CCL3L1P16619 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms