Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC15.55■□□□□ 0.08
VCANP13611 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
VCANP13611 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC15.55■□□□□ 0.08
VCANP13611 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC15.55■□□□□ 0.08
VCANP13611 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC15.55■□□□□ 0.08
VCANP13611 AC080013.5-201ENST00000607044 679 ntBASIC15.55■□□□□ 0.08
VCANP13611 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC15.55■□□□□ 0.08
VCANP13611 AP000593.2-201ENST00000542775 1433 ntBASIC15.55■□□□□ 0.08
VCANP13611 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCANP13611 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
VCANP13611 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCANP13611 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
VCANP13611 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
VCANP13611 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.54■□□□□ 0.08
VCANP13611 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCANP13611 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC15.54■□□□□ 0.08
VCANP13611 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
VCANP13611 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
VCANP13611 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC15.54■□□□□ 0.08
VCANP13611 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCANP13611 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCANP13611 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC15.54■□□□□ 0.08
VCANP13611 AL450487.2-201ENST00000615934 407 ntBASIC15.54■□□□□ 0.08
VCANP13611 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
VCANP13611 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC15.54■□□□□ 0.08
VCANP13611 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC15.54■□□□□ 0.08
VCANP13611 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.54■□□□□ 0.08
VCANP13611 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
VCANP13611 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC15.54■□□□□ 0.08
VCANP13611 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCANP13611 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCANP13611 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCANP13611 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCANP13611 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.54■□□□□ 0.08
VCANP13611 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
VCANP13611 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCANP13611 SHC1P1-201ENST00000425230 1745 ntBASIC15.54■□□□□ 0.08
VCANP13611 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC15.54■□□□□ 0.08
VCANP13611 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCANP13611 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
VCANP13611 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCANP13611 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
VCANP13611 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC15.54■□□□□ 0.08
VCANP13611 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCANP13611 TSPY25P-201ENST00000429463 745 ntBASIC15.54■□□□□ 0.08
VCANP13611 KLF2P1-201ENST00000447438 1042 ntBASIC15.54■□□□□ 0.08
VCANP13611 AP000358.1-201ENST00000456260 156 ntBASIC15.54■□□□□ 0.08
VCANP13611 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VCANP13611 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCANP13611 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.54■□□□□ 0.08
VCANP13611 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC15.54■□□□□ 0.08
VCANP13611 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VCANP13611 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.54■□□□□ 0.08
VCANP13611 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
VCANP13611 PHB-210ENST00000511832 1509 ntTSL 2 BASIC15.54■□□□□ 0.08
VCANP13611 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.54■□□□□ 0.08
VCANP13611 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC15.54■□□□□ 0.08
VCANP13611 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC15.54■□□□□ 0.08
VCANP13611 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCANP13611 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC15.53■□□□□ 0.08
VCANP13611 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC15.53■□□□□ 0.08
VCANP13611 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC15.53■□□□□ 0.08
VCANP13611 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC15.53■□□□□ 0.08
VCANP13611 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC15.53■□□□□ 0.08
VCANP13611 AC020922.4-201ENST00000621389 339 ntBASIC15.53■□□□□ 0.08
VCANP13611 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCANP13611 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
VCANP13611 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCANP13611 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC15.53■□□□□ 0.08
VCANP13611 AHCYP3-201ENST00000420053 1279 ntBASIC15.53■□□□□ 0.08
VCANP13611 AC078875.1-201ENST00000431907 724 ntBASIC15.53■□□□□ 0.08
VCANP13611 AC068867.1-201ENST00000559855 150 ntBASIC15.53■□□□□ 0.08
VCANP13611 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.53■□□□□ 0.08
VCANP13611 LINC01783-202ENST00000614408 828 ntBASIC15.53■□□□□ 0.08
VCANP13611 BX284668.2-205ENST00000619677 828 ntBASIC15.53■□□□□ 0.08
VCANP13611 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.53■□□□□ 0.08
VCANP13611 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
VCANP13611 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCANP13611 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC15.53■□□□□ 0.08
VCANP13611 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VCANP13611 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
VCANP13611 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
VCANP13611 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCANP13611 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCANP13611 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCANP13611 CHCHD2P9-201ENST00000461726 456 ntBASIC15.53■□□□□ 0.08
VCANP13611 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC15.53■□□□□ 0.08
VCANP13611 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC15.53■□□□□ 0.08
VCANP13611 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCANP13611 NOC2LP2-201ENST00000407594 1944 ntBASIC15.53■□□□□ 0.08
VCANP13611 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCANP13611 AC009090.5-201ENST00000624886 2285 ntBASIC15.53■□□□□ 0.08
VCANP13611 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VCANP13611 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
VCANP13611 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VCANP13611 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VCANP13611 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.52■□□□□ 0.08
VCANP13611 PHF5A-201ENST00000216252 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VCANP13611 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VCANP13611 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms