Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
CXCL1P09341 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC12.03□□□□□ -0.48
CXCL1P09341 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC12.03□□□□□ -0.48
CXCL1P09341 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC12.03□□□□□ -0.48
CXCL1P09341 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CXCL1P09341 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
CXCL1P09341 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC12.03□□□□□ -0.48
CXCL1P09341 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC12.02□□□□□ -0.48
CXCL1P09341 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CXCL1P09341 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.48
CXCL1P09341 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC12.02□□□□□ -0.48
CXCL1P09341 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.48
CXCL1P09341 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC12.02□□□□□ -0.48
CXCL1P09341 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
CXCL1P09341 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CXCL1P09341 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC12.02□□□□□ -0.48
CXCL1P09341 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CXCL1P09341 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
CXCL1P09341 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
CXCL1P09341 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CXCL1P09341 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CXCL1P09341 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC12.02□□□□□ -0.48
CXCL1P09341 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC12.02□□□□□ -0.48
CXCL1P09341 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CXCL1P09341 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CXCL1P09341 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
CXCL1P09341 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CXCL1P09341 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC12.02□□□□□ -0.49
CXCL1P09341 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CXCL1P09341 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CXCL1P09341 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CXCL1P09341 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CXCL1P09341 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CXCL1P09341 EMD-201ENST00000369835 966 ntTSL 3 BASIC12.02□□□□□ -0.49
CXCL1P09341 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CXCL1P09341 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CXCL1P09341 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.49
CXCL1P09341 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC12.02□□□□□ -0.49
CXCL1P09341 MIR3909-201ENST00000579518 119 ntBASIC12.02□□□□□ -0.49
CXCL1P09341 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC12.02□□□□□ -0.49
CXCL1P09341 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC12.02□□□□□ -0.49
CXCL1P09341 IGHV3OR16-7-201ENST00000604106 360 ntBASIC12.02□□□□□ -0.49
CXCL1P09341 AC021097.1-201ENST00000607902 574 ntBASIC12.02□□□□□ -0.49
CXCL1P09341 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC12.02□□□□□ -0.49
CXCL1P09341 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC12.02□□□□□ -0.49
CXCL1P09341 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC12.02□□□□□ -0.49
CXCL1P09341 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC12.02□□□□□ -0.49
CXCL1P09341 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CXCL1P09341 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC12.02□□□□□ -0.49
CXCL1P09341 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
CXCL1P09341 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC12.02□□□□□ -0.49
CXCL1P09341 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CXCL1P09341 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CXCL1P09341 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CXCL1P09341 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
CXCL1P09341 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CXCL1P09341 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CXCL1P09341 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CXCL1P09341 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CXCL1P09341 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CXCL1P09341 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
CXCL1P09341 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CXCL1P09341 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CXCL1P09341 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC12.02□□□□□ -0.49
CXCL1P09341 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC12.02□□□□□ -0.49
CXCL1P09341 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC12.02□□□□□ -0.49
CXCL1P09341 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
CXCL1P09341 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CXCL1P09341 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
CXCL1P09341 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC12.01□□□□□ -0.49
CXCL1P09341 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
CXCL1P09341 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CXCL1P09341 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CXCL1P09341 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC12.01□□□□□ -0.49
CXCL1P09341 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CXCL1P09341 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CXCL1P09341 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC12.01□□□□□ -0.49
CXCL1P09341 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CXCL1P09341 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
CXCL1P09341 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CXCL1P09341 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CXCL1P09341 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CXCL1P09341 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CXCL1P09341 NIN-202ENST00000324330 4364 ntTSL 5 BASIC12.01□□□□□ -0.49
CXCL1P09341 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
CXCL1P09341 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
CXCL1P09341 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC12.01□□□□□ -0.49
CXCL1P09341 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
CXCL1P09341 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CXCL1P09341 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CXCL1P09341 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CXCL1P09341 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CXCL1P09341 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC12.01□□□□□ -0.49
CXCL1P09341 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
CXCL1P09341 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CXCL1P09341 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC12.01□□□□□ -0.49
CXCL1P09341 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
CXCL1P09341 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
CXCL1P09341 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CXCL1P09341 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms