Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.9□□□□□ -0.02
HOXC4P09017 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC14.9□□□□□ -0.02
HOXC4P09017 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.9□□□□□ -0.02
HOXC4P09017 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HOXC4P09017 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
HOXC4P09017 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HOXC4P09017 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HOXC4P09017 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HOXC4P09017 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC14.9□□□□□ -0.02
HOXC4P09017 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.9□□□□□ -0.02
HOXC4P09017 BTBD6P1-201ENST00000412176 1267 ntBASIC14.9□□□□□ -0.02
HOXC4P09017 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC14.9□□□□□ -0.02
HOXC4P09017 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC14.9□□□□□ -0.02
HOXC4P09017 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC14.9□□□□□ -0.02
HOXC4P09017 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC14.9□□□□□ -0.02
HOXC4P09017 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
HOXC4P09017 AGER-214ENST00000538695 487 ntTSL 2 BASIC14.9□□□□□ -0.02
HOXC4P09017 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HOXC4P09017 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
HOXC4P09017 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC14.9□□□□□ -0.02
HOXC4P09017 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC14.9□□□□□ -0.02
HOXC4P09017 MIR4538-201ENST00000581377 78 ntBASIC14.9□□□□□ -0.02
HOXC4P09017 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC14.9□□□□□ -0.02
HOXC4P09017 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HOXC4P09017 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
HOXC4P09017 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HOXC4P09017 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.9□□□□□ -0.02
HOXC4P09017 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HOXC4P09017 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
HOXC4P09017 AP000593.2-201ENST00000542775 1433 ntBASIC14.9□□□□□ -0.02
HOXC4P09017 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.9□□□□□ -0.02
HOXC4P09017 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.9□□□□□ -0.02
HOXC4P09017 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
HOXC4P09017 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
HOXC4P09017 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC14.9□□□□□ -0.02
HOXC4P09017 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HOXC4P09017 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HOXC4P09017 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HOXC4P09017 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
HOXC4P09017 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.89□□□□□ -0.03
HOXC4P09017 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC14.89□□□□□ -0.03
HOXC4P09017 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 AC007950.2-201ENST00000615045 2347 ntBASIC14.89□□□□□ -0.03
HOXC4P09017 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC14.89□□□□□ -0.03
HOXC4P09017 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.89□□□□□ -0.03
HOXC4P09017 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC14.89□□□□□ -0.03
HOXC4P09017 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.89□□□□□ -0.03
HOXC4P09017 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 LILRP1-201ENST00000444199 1370 ntBASIC14.89□□□□□ -0.03
HOXC4P09017 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
HOXC4P09017 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
HOXC4P09017 AL137783.1-201ENST00000623494 1896 ntBASIC14.89□□□□□ -0.03
HOXC4P09017 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC14.89□□□□□ -0.03
HOXC4P09017 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 AL136309.1-201ENST00000403917 691 ntBASIC14.89□□□□□ -0.03
HOXC4P09017 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC14.89□□□□□ -0.03
HOXC4P09017 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC14.89□□□□□ -0.03
HOXC4P09017 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 RGS5-214ENST00000429865 754 ntTSL 3 BASIC14.89□□□□□ -0.03
HOXC4P09017 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC14.89□□□□□ -0.03
HOXC4P09017 AL391280.1-201ENST00000506969 1062 ntBASIC14.89□□□□□ -0.03
HOXC4P09017 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC14.89□□□□□ -0.03
HOXC4P09017 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC14.89□□□□□ -0.03
HOXC4P09017 ACR-203ENST00000529621 708 ntTSL 5 BASIC14.89□□□□□ -0.03
HOXC4P09017 RIT1-205ENST00000539040 919 ntTSL 2 BASIC14.89□□□□□ -0.03
HOXC4P09017 CYGB-203ENST00000589145 788 ntTSL 3 BASIC14.89□□□□□ -0.03
HOXC4P09017 KLK3-211ENST00000597483 810 ntTSL 2 BASIC14.89□□□□□ -0.03
HOXC4P09017 AC004466.1-201ENST00000599515 1080 ntBASIC14.89□□□□□ -0.03
HOXC4P09017 OR10B1P-201ENST00000601666 907 ntBASIC14.89□□□□□ -0.03
HOXC4P09017 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC14.89□□□□□ -0.03
HOXC4P09017 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.89□□□□□ -0.03
HOXC4P09017 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
HOXC4P09017 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.89□□□□□ -0.03
HOXC4P09017 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HOXC4P09017 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.88□□□□□ -0.03
HOXC4P09017 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
HOXC4P09017 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXC4P09017 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
HOXC4P09017 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
HOXC4P09017 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms