Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DOAP06340 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DOAP06340 SNX21-203ENST00000372541 771 ntTSL 2 BASIC18.06■□□□□ 0.48
HLA-DOAP06340 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC18.06■□□□□ 0.48
HLA-DOAP06340 MTX1P1-201ENST00000440904 838 ntBASIC18.06■□□□□ 0.48
HLA-DOAP06340 CNN2P10-201ENST00000443067 918 ntBASIC18.06■□□□□ 0.48
HLA-DOAP06340 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC18.06■□□□□ 0.48
HLA-DOAP06340 AC099548.2-209ENST00000480264 625 ntBASIC18.06■□□□□ 0.48
HLA-DOAP06340 ABBA01031663.1-201ENST00000635630 790 ntBASIC18.06■□□□□ 0.48
HLA-DOAP06340 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
HLA-DOAP06340 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DOAP06340 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DOAP06340 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC18.06■□□□□ 0.48
HLA-DOAP06340 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.06■□□□□ 0.48
HLA-DOAP06340 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DOAP06340 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC18.06■□□□□ 0.48
HLA-DOAP06340 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DOAP06340 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
HLA-DOAP06340 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 ANKRD30BP2-201ENST00000435744 1610 ntBASIC18.05■□□□□ 0.48
HLA-DOAP06340 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 ACR-203ENST00000529621 708 ntTSL 5 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 EMC4-209ENST00000559421 497 ntTSL 2 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 AP006547.1-201ENST00000563435 692 ntBASIC18.05■□□□□ 0.48
HLA-DOAP06340 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 AC244093.1-201ENST00000610837 814 ntBASIC18.05■□□□□ 0.48
HLA-DOAP06340 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
HLA-DOAP06340 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DOAP06340 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.04■□□□□ 0.48
HLA-DOAP06340 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 AC055811.4-201ENST00000624039 1754 ntBASIC18.04■□□□□ 0.48
HLA-DOAP06340 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
HLA-DOAP06340 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC18.04■□□□□ 0.48
HLA-DOAP06340 AL133338.1-201ENST00000565695 1517 ntBASIC18.04■□□□□ 0.48
HLA-DOAP06340 AC015818.8-201ENST00000587907 1519 ntBASIC18.04■□□□□ 0.48
HLA-DOAP06340 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.04■□□□□ 0.48
HLA-DOAP06340 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
HLA-DOAP06340 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
HLA-DOAP06340 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DOAP06340 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC18.04■□□□□ 0.48
HLA-DOAP06340 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC18.04■□□□□ 0.48
HLA-DOAP06340 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC18.04■□□□□ 0.48
HLA-DOAP06340 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HLA-DOAP06340 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms