Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.51□□□□□ -0.09
LDB3O75112 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 GAPDHP40-201ENST00000505218 1006 ntBASIC14.51□□□□□ -0.09
LDB3O75112 AC026410.3-201ENST00000514280 936 ntBASIC14.51□□□□□ -0.09
LDB3O75112 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC14.51□□□□□ -0.09
LDB3O75112 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 AC120045.2-201ENST00000567334 178 ntBASIC14.51□□□□□ -0.09
LDB3O75112 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.51□□□□□ -0.09
LDB3O75112 WFDC1-204ENST00000613603 549 ntBASIC14.51□□□□□ -0.09
LDB3O75112 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.51□□□□□ -0.09
LDB3O75112 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 AC025048.6-201ENST00000634326 1161 ntBASIC14.51□□□□□ -0.09
LDB3O75112 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.51□□□□□ -0.09
LDB3O75112 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.51□□□□□ -0.09
LDB3O75112 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
LDB3O75112 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
LDB3O75112 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.51□□□□□ -0.09
LDB3O75112 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.51□□□□□ -0.09
LDB3O75112 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
LDB3O75112 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.5□□□□□ -0.09
LDB3O75112 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
LDB3O75112 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
LDB3O75112 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC14.5□□□□□ -0.09
LDB3O75112 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.5□□□□□ -0.09
LDB3O75112 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 C1QBPP1-201ENST00000400117 770 ntBASIC14.5□□□□□ -0.09
LDB3O75112 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.5□□□□□ -0.09
LDB3O75112 AL035633.1-201ENST00000406139 838 ntBASIC14.5□□□□□ -0.09
LDB3O75112 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC14.5□□□□□ -0.09
LDB3O75112 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.5□□□□□ -0.09
LDB3O75112 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.5□□□□□ -0.09
LDB3O75112 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC14.5□□□□□ -0.09
LDB3O75112 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.5□□□□□ -0.09
LDB3O75112 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.5□□□□□ -0.09
LDB3O75112 AC027307.3-201ENST00000594262 1100 ntBASIC14.5□□□□□ -0.09
LDB3O75112 AC133539.2-201ENST00000604757 467 ntBASIC14.5□□□□□ -0.09
LDB3O75112 LINC02084-201ENST00000606069 1096 ntBASIC14.5□□□□□ -0.09
LDB3O75112 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.5□□□□□ -0.09
LDB3O75112 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.5□□□□□ -0.09
LDB3O75112 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.5□□□□□ -0.09
LDB3O75112 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
LDB3O75112 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
LDB3O75112 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.5□□□□□ -0.09
LDB3O75112 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
LDB3O75112 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
LDB3O75112 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.5□□□□□ -0.09
LDB3O75112 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC14.49□□□□□ -0.09
LDB3O75112 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.49□□□□□ -0.09
LDB3O75112 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.49□□□□□ -0.09
LDB3O75112 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
LDB3O75112 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
LDB3O75112 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.49□□□□□ -0.09
LDB3O75112 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms