Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC25.64■■□□□ 1.69
CUX2O14529 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
CUX2O14529 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC25.64■■□□□ 1.69
CUX2O14529 DKKL1P1-201ENST00000400550 698 ntBASIC25.64■■□□□ 1.69
CUX2O14529 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC25.64■■□□□ 1.69
CUX2O14529 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC25.64■■□□□ 1.69
CUX2O14529 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC25.64■■□□□ 1.69
CUX2O14529 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
CUX2O14529 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC25.64■■□□□ 1.69
CUX2O14529 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
CUX2O14529 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC25.64■■□□□ 1.69
CUX2O14529 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC25.64■■□□□ 1.69
CUX2O14529 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.69
CUX2O14529 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.69
CUX2O14529 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC25.64■■□□□ 1.69
CUX2O14529 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
CUX2O14529 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CUX2O14529 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC25.64■■□□□ 1.69
CUX2O14529 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC25.64■■□□□ 1.69
CUX2O14529 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CUX2O14529 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC25.63■■□□□ 1.69
CUX2O14529 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC25.63■■□□□ 1.69
CUX2O14529 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CUX2O14529 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CUX2O14529 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CUX2O14529 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
CUX2O14529 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC25.63■■□□□ 1.69
CUX2O14529 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC25.63■■□□□ 1.69
CUX2O14529 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
CUX2O14529 GUSBP10-201ENST00000417412 665 ntBASIC25.63■■□□□ 1.69
CUX2O14529 RNLS-203ENST00000437752 525 ntTSL 2 BASIC25.63■■□□□ 1.69
CUX2O14529 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC25.63■■□□□ 1.69
CUX2O14529 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC25.63■■□□□ 1.69
CUX2O14529 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC25.63■■□□□ 1.69
CUX2O14529 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CUX2O14529 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CUX2O14529 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC25.63■■□□□ 1.69
CUX2O14529 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC25.63■■□□□ 1.69
CUX2O14529 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CUX2O14529 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
CUX2O14529 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
CUX2O14529 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CUX2O14529 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC25.62■■□□□ 1.69
CUX2O14529 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC25.62■■□□□ 1.69
CUX2O14529 BANF1P3-201ENST00000412556 261 ntBASIC25.62■■□□□ 1.69
CUX2O14529 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC25.62■■□□□ 1.69
CUX2O14529 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC25.62■■□□□ 1.69
CUX2O14529 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC25.62■■□□□ 1.69
CUX2O14529 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CUX2O14529 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC25.62■■□□□ 1.69
CUX2O14529 MPI-203ENST00000535694 1523 ntTSL 2 BASIC25.62■■□□□ 1.69
CUX2O14529 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CUX2O14529 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CUX2O14529 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CUX2O14529 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC25.62■■□□□ 1.69
CUX2O14529 AC022211.2-201ENST00000585075 2527 ntBASIC25.62■■□□□ 1.69
CUX2O14529 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
CUX2O14529 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CUX2O14529 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC25.62■■□□□ 1.69
CUX2O14529 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CUX2O14529 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC25.62■■□□□ 1.69
CUX2O14529 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
CUX2O14529 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC25.61■■□□□ 1.69
CUX2O14529 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC25.61■■□□□ 1.69
CUX2O14529 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CUX2O14529 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC25.61■■□□□ 1.69
CUX2O14529 ACTG1P19-201ENST00000418987 1116 ntBASIC25.61■■□□□ 1.69
CUX2O14529 AL929302.1-201ENST00000426556 871 ntBASIC25.61■■□□□ 1.69
CUX2O14529 KRT18P46-201ENST00000435568 1279 ntBASIC25.61■■□□□ 1.69
CUX2O14529 AC108724.1-201ENST00000481669 352 ntBASIC25.61■■□□□ 1.69
CUX2O14529 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC25.61■■□□□ 1.69
CUX2O14529 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC25.61■■□□□ 1.69
CUX2O14529 AC009093.2-201ENST00000563477 546 ntTSL 4 BASIC25.61■■□□□ 1.69
CUX2O14529 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC25.61■■□□□ 1.69
CUX2O14529 AP000322.3-201ENST00000608665 388 ntBASIC25.61■■□□□ 1.69
CUX2O14529 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CUX2O14529 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC25.61■■□□□ 1.69
CUX2O14529 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CUX2O14529 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CUX2O14529 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CUX2O14529 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CUX2O14529 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC25.61■■□□□ 1.69
CUX2O14529 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
CUX2O14529 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC25.61■■□□□ 1.69
CUX2O14529 AC080080.1-201ENST00000625121 2420 ntBASIC25.61■■□□□ 1.69
CUX2O14529 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CUX2O14529 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CUX2O14529 AC012313.1-201ENST00000593393 3059 ntBASIC25.61■■□□□ 1.69
CUX2O14529 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
CUX2O14529 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC25.6■■□□□ 1.69
CUX2O14529 AL451000.1-201ENST00000451300 1186 ntBASIC25.6■■□□□ 1.69
CUX2O14529 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC25.6■■□□□ 1.69
CUX2O14529 AC114947.1-202ENST00000514136 344 ntBASIC25.6■■□□□ 1.69
CUX2O14529 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CUX2O14529 AC007952.4-201ENST00000573866 637 ntBASIC25.6■■□□□ 1.69
CUX2O14529 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC25.6■■□□□ 1.69
CUX2O14529 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC25.6■■□□□ 1.69
CUX2O14529 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC25.6■■□□□ 1.69
CUX2O14529 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CUX2O14529 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms