Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 TCAF2P1-201ENST00000291129 2421 ntBASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 ZBTB12BP-201ENST00000314232 1122 ntBASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 LBX2-201ENST00000341396 886 ntTSL 3 BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 AC022616.1-201ENST00000518688 554 ntBASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 AP000812.2-201ENST00000538934 718 ntBASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 KRT90P-201ENST00000549264 1064 ntBASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 ETV2-208ENST00000621247 941 ntTSL 5 BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 LTF-203ENST00000426532 2494 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM35Q9UPQ4 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 GPR53P-205ENST00000457298 1084 ntBASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 TMEM14EP-202ENST00000639378 1296 ntBASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 AC055811.4-201ENST00000624039 1754 ntBASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM35Q9UPQ4 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
TRIM35Q9UPQ4 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC19.89■□□□□ 0.78
TRIM35Q9UPQ4 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.78
TRIM35Q9UPQ4 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
TRIM35Q9UPQ4 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM35Q9UPQ4 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM35Q9UPQ4 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM35Q9UPQ4 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM35Q9UPQ4 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM35Q9UPQ4 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM35Q9UPQ4 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM35Q9UPQ4 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM35Q9UPQ4 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM35Q9UPQ4 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM35Q9UPQ4 POM121L8P-201ENST00000417732 1281 ntBASIC19.89■□□□□ 0.77
TRIM35Q9UPQ4 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC19.89■□□□□ 0.77
TRIM35Q9UPQ4 FAM197Y7-201ENST00000432892 766 ntBASIC19.89■□□□□ 0.77
TRIM35Q9UPQ4 AC016694.1-201ENST00000434179 700 ntBASIC19.89■□□□□ 0.77
TRIM35Q9UPQ4 POM121L9P-203ENST00000441984 1285 ntBASIC19.89■□□□□ 0.77
TRIM35Q9UPQ4 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM35Q9UPQ4 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC19.89■□□□□ 0.77
TRIM35Q9UPQ4 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC19.89■□□□□ 0.77
TRIM35Q9UPQ4 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC19.89■□□□□ 0.77
TRIM35Q9UPQ4 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC19.89■□□□□ 0.77
TRIM35Q9UPQ4 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms