Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC17.23■□□□□ 0.35
CCSER1Q9C0I3 RN7SL204P-201ENST00000582831 262 ntBASIC17.23■□□□□ 0.35
CCSER1Q9C0I3 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CCSER1Q9C0I3 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCSER1Q9C0I3 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCSER1Q9C0I3 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCSER1Q9C0I3 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCSER1Q9C0I3 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCSER1Q9C0I3 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCSER1Q9C0I3 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CCSER1Q9C0I3 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCSER1Q9C0I3 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCSER1Q9C0I3 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 TEX30-203ENST00000376022 828 ntTSL 2 BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 AC104596.2-201ENST00000512793 793 ntBASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 LILRP1-201ENST00000444199 1370 ntBASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
CCSER1Q9C0I3 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 INTS4P2-202ENST00000614726 2019 ntBASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 AC098850.1-201ENST00000419919 790 ntBASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 HLA-K-203ENST00000430151 1046 ntBASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 AC002472.2-201ENST00000442739 958 ntBASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 AC092552.1-201ENST00000547243 906 ntBASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 AC120045.2-201ENST00000567334 178 ntBASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 LINC02560-201ENST00000596379 459 ntBASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 LINC02084-201ENST00000606069 1096 ntBASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 AC008761.3-201ENST00000624803 892 ntBASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 PRSS30P-206ENST00000641773 873 ntBASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 AL158070.2-201ENST00000623713 1621 ntBASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCSER1Q9C0I3 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CCSER1Q9C0I3 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
CCSER1Q9C0I3 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC17.21■□□□□ 0.34
CCSER1Q9C0I3 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
CCSER1Q9C0I3 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
CCSER1Q9C0I3 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
CCSER1Q9C0I3 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCSER1Q9C0I3 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.2■□□□□ 0.34
CCSER1Q9C0I3 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
CCSER1Q9C0I3 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCSER1Q9C0I3 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC17.2■□□□□ 0.34
CCSER1Q9C0I3 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CCSER1Q9C0I3 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCSER1Q9C0I3 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCSER1Q9C0I3 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
CCSER1Q9C0I3 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCSER1Q9C0I3 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCSER1Q9C0I3 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCSER1Q9C0I3 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms