Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RTFDC1Q9BY42 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RTFDC1Q9BY42 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RTFDC1Q9BY42 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.48■□□□□ 0.55
RTFDC1Q9BY42 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RTFDC1Q9BY42 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RTFDC1Q9BY42 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
RTFDC1Q9BY42 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RTFDC1Q9BY42 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 AC008267.1-201ENST00000474858 1069 ntBASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 CFL1-214ENST00000534769 758 ntTSL 2 BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 SNORD3B-2-202ENST00000571722 791 ntBASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 AL136301.1-201ENST00000615830 422 ntBASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 AL157791.1-201ENST00000553667 1699 ntBASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
RTFDC1Q9BY42 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 REXO1L5P-201ENST00000622260 2098 ntBASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 AL513523.2-202ENST00000427283 2040 ntBASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 AC069218.1-201ENST00000435269 762 ntBASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 CDC23-208ENST00000505120 455 ntTSL 3 BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 AL160314.3-201ENST00000556041 767 ntBASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 AC020922.3-201ENST00000595064 547 ntBASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 AL391005.1-201ENST00000623953 2435 ntBASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 AL360270.3-201ENST00000609118 1348 ntBASIC18.46■□□□□ 0.55
RTFDC1Q9BY42 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.54
RTFDC1Q9BY42 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.54
RTFDC1Q9BY42 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC18.46■□□□□ 0.54
RTFDC1Q9BY42 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.45■□□□□ 0.54
RTFDC1Q9BY42 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
RTFDC1Q9BY42 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RTFDC1Q9BY42 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RTFDC1Q9BY42 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.45■□□□□ 0.54
RTFDC1Q9BY42 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RTFDC1Q9BY42 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RTFDC1Q9BY42 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
RTFDC1Q9BY42 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RTFDC1Q9BY42 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RTFDC1Q9BY42 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RTFDC1Q9BY42 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC18.45■□□□□ 0.54
RTFDC1Q9BY42 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
RTFDC1Q9BY42 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC18.45■□□□□ 0.54
RTFDC1Q9BY42 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RTFDC1Q9BY42 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC18.45■□□□□ 0.54
RTFDC1Q9BY42 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC18.45■□□□□ 0.54
RTFDC1Q9BY42 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms