Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 MIR1247-201ENST00000408206 136 ntBASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 AL591846.1-201ENST00000451736 433 ntBASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 AC104306.2-201ENST00000451877 341 ntBASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 ZBTB45P1-201ENST00000452761 1456 ntBASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 MIR3615-201ENST00000581999 87 ntBASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 AC007950.2-201ENST00000615045 2347 ntBASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 AC020658.6-201ENST00000623564 1870 ntBASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 AL023775.1-201ENST00000454907 1746 ntBASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 AL360270.3-201ENST00000609118 1348 ntBASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 SNX21-203ENST00000372541 771 ntTSL 2 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 BTBD6P1-201ENST00000412176 1267 ntBASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 GPAA1P2-201ENST00000417923 928 ntBASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 FAM8A4P-201ENST00000435433 1213 ntBASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 MTX1P1-201ENST00000440904 838 ntBASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 AL391280.1-201ENST00000506969 1062 ntBASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 DUX4L47-201ENST00000566374 394 ntBASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 EEF1DP1-201ENST00000585891 896 ntBASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 OR10B1P-201ENST00000601666 907 ntBASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 AL096828.3-201ENST00000615354 462 ntBASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 CROCCP1-201ENST00000426910 5675 ntBASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 PES1-204ENST00000402284 2144 ntTSL 5 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.31■□□□□ 0.2
PAAF1Q9BRP4 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms