Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
COL12A1Q99715 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC13.18□□□□□ -0.3
COL12A1Q99715 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL12A1Q99715 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC13.18□□□□□ -0.3
COL12A1Q99715 MIR6769A-201ENST00000617340 73 ntBASIC13.18□□□□□ -0.3
COL12A1Q99715 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL12A1Q99715 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC13.18□□□□□ -0.3
COL12A1Q99715 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL12A1Q99715 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL12A1Q99715 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL12A1Q99715 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC13.17□□□□□ -0.3
COL12A1Q99715 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL12A1Q99715 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC13.17□□□□□ -0.3
COL12A1Q99715 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC13.17□□□□□ -0.3
COL12A1Q99715 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC13.17□□□□□ -0.3
COL12A1Q99715 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC13.17□□□□□ -0.3
COL12A1Q99715 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL12A1Q99715 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC13.17□□□□□ -0.3
COL12A1Q99715 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL12A1Q99715 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC13.17□□□□□ -0.3
COL12A1Q99715 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL12A1Q99715 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
COL12A1Q99715 HLA-DMA-203ENST00000395305 777 ntBASIC13.17□□□□□ -0.3
COL12A1Q99715 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL12A1Q99715 EIF3FP3-201ENST00000434851 1086 ntBASIC13.17□□□□□ -0.3
COL12A1Q99715 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC13.17□□□□□ -0.3
COL12A1Q99715 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL12A1Q99715 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL12A1Q99715 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL12A1Q99715 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL12A1Q99715 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL12A1Q99715 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL12A1Q99715 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC13.17□□□□□ -0.3
COL12A1Q99715 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC13.17□□□□□ -0.3
COL12A1Q99715 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
COL12A1Q99715 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL12A1Q99715 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.17□□□□□ -0.3
COL12A1Q99715 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL12A1Q99715 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC13.16□□□□□ -0.3
COL12A1Q99715 AL583805.1-201ENST00000391389 531 ntBASIC13.16□□□□□ -0.3
COL12A1Q99715 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC13.16□□□□□ -0.3
COL12A1Q99715 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC13.16□□□□□ -0.3
COL12A1Q99715 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
COL12A1Q99715 MIR4313-201ENST00000580760 101 ntBASIC13.16□□□□□ -0.3
COL12A1Q99715 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC13.16□□□□□ -0.3
COL12A1Q99715 RAN-210ENST00000541630 1475 ntTSL 2 BASIC13.16□□□□□ -0.3
COL12A1Q99715 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL12A1Q99715 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL12A1Q99715 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL12A1Q99715 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL12A1Q99715 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL12A1Q99715 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
COL12A1Q99715 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC13.16□□□□□ -0.3
COL12A1Q99715 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL12A1Q99715 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL12A1Q99715 RN7SL494P-201ENST00000461517 304 ntBASIC13.16□□□□□ -0.3
COL12A1Q99715 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL12A1Q99715 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC13.16□□□□□ -0.3
COL12A1Q99715 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC13.16□□□□□ -0.3
COL12A1Q99715 AC138466.3-201ENST00000619983 221 ntBASIC13.16□□□□□ -0.3
COL12A1Q99715 HLA-DQB1-202ENST00000399079 1501 ntBASIC13.16□□□□□ -0.3
COL12A1Q99715 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC13.16□□□□□ -0.3
COL12A1Q99715 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL12A1Q99715 CLUHP2-201ENST00000426660 1303 ntBASIC13.16□□□□□ -0.3
COL12A1Q99715 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL12A1Q99715 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
COL12A1Q99715 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL12A1Q99715 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL12A1Q99715 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
COL12A1Q99715 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL12A1Q99715 BAK1P1-201ENST00000317045 636 ntBASIC13.16□□□□□ -0.3
COL12A1Q99715 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL12A1Q99715 AC078875.1-201ENST00000431907 724 ntBASIC13.16□□□□□ -0.3
COL12A1Q99715 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL12A1Q99715 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL12A1Q99715 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC13.16□□□□□ -0.3
COL12A1Q99715 AC018846.1-201ENST00000568231 183 ntBASIC13.16□□□□□ -0.3
COL12A1Q99715 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
COL12A1Q99715 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL12A1Q99715 AC244394.1-201ENST00000435000 1665 ntBASIC13.15□□□□□ -0.3
COL12A1Q99715 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL12A1Q99715 STK26-204ENST00000481105 1835 ntTSL 2 BASIC13.15□□□□□ -0.3
COL12A1Q99715 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL12A1Q99715 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
COL12A1Q99715 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC13.15□□□□□ -0.3
COL12A1Q99715 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL12A1Q99715 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC13.15□□□□□ -0.3
COL12A1Q99715 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC13.15□□□□□ -0.3
COL12A1Q99715 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC13.15□□□□□ -0.3
COL12A1Q99715 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC13.15□□□□□ -0.3
COL12A1Q99715 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
COL12A1Q99715 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
COL12A1Q99715 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL12A1Q99715 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL12A1Q99715 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL12A1Q99715 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC13.15□□□□□ -0.3
COL12A1Q99715 FKBP4P6-201ENST00000457486 1332 ntBASIC13.15□□□□□ -0.3
COL12A1Q99715 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL12A1Q99715 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL12A1Q99715 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms