Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 TAF8-206ENST00000472818 719 ntTSL 2 BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 AC092552.1-201ENST00000547243 906 ntBASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 LINC02084-201ENST00000606069 1096 ntBASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 MIR8072-201ENST00000614241 80 ntBASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 AL358472.5-202ENST00000641448 1267 ntBASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 MST1L-201ENST00000442552 2185 ntBASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 AC006486.2-201ENST00000624246 2199 ntBASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 AC013268.4-201ENST00000637413 2228 ntBASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
NUP54Q7Z3B4 AL109954.1-202ENST00000564051 2148 ntBASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 AL442647.2-201ENST00000429864 857 ntBASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 COX20P2-201ENST00000452636 358 ntBASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 BRI3BPP1-201ENST00000594224 787 ntBASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 AC008494.3-201ENST00000606615 944 ntBASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 HYMAI-201ENST00000635591 3347 ntBASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 AC126365.1-201ENST00000578585 1514 ntBASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
NUP54Q7Z3B4 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
NUP54Q7Z3B4 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms