Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 AC023024.2-201ENST00000623561 1993 ntBASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 CD99-202ENST00000381180 530 ntTSL 2 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 AC254562.1-201ENST00000417586 456 ntBASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 AL592309.1-201ENST00000443127 649 ntBASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 KRT18P34-201ENST00000488218 1270 ntBASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 KRT8P48-201ENST00000515599 1220 ntBASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 OR2I1P-210ENST00000642037 4691 ntBASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 BSG-215ENST00000618006 1329 ntTSL 2 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.89□□□□□ -0.03
PPP4R4Q6NUP7 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 AP006288.1-201ENST00000446065 395 ntBASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 AP000344.2-201ENST00000512987 629 ntBASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 AC109635.5-201ENST00000533593 962 ntBASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 AL365330.1-201ENST00000607459 531 ntBASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
PPP4R4Q6NUP7 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
PPP4R4Q6NUP7 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms