Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
LIM2P55344 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.66□□□□□ -0.06
LIM2P55344 AC138761.1-201ENST00000584393 385 ntBASIC14.66□□□□□ -0.06
LIM2P55344 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.66□□□□□ -0.06
LIM2P55344 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.66□□□□□ -0.06
LIM2P55344 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LIM2P55344 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.66□□□□□ -0.06
LIM2P55344 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.66□□□□□ -0.06
LIM2P55344 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC14.66□□□□□ -0.06
LIM2P55344 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LIM2P55344 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
LIM2P55344 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
LIM2P55344 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.66□□□□□ -0.06
LIM2P55344 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
LIM2P55344 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
LIM2P55344 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.66□□□□□ -0.06
LIM2P55344 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LIM2P55344 AC126365.1-201ENST00000578585 1514 ntBASIC14.66□□□□□ -0.06
LIM2P55344 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIM2P55344 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIM2P55344 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIM2P55344 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.65□□□□□ -0.06
LIM2P55344 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.65□□□□□ -0.06
LIM2P55344 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
LIM2P55344 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
LIM2P55344 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LIM2P55344 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LIM2P55344 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LIM2P55344 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
LIM2P55344 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
LIM2P55344 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIM2P55344 CICP11-201ENST00000434745 2827 ntBASIC14.65□□□□□ -0.06
LIM2P55344 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIM2P55344 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIM2P55344 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.65□□□□□ -0.06
LIM2P55344 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
LIM2P55344 AC098850.1-201ENST00000419919 790 ntBASIC14.65□□□□□ -0.06
LIM2P55344 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.65□□□□□ -0.06
LIM2P55344 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC14.65□□□□□ -0.06
LIM2P55344 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.65□□□□□ -0.06
LIM2P55344 MIR3197-201ENST00000582241 73 ntBASIC14.65□□□□□ -0.06
LIM2P55344 AL049840.4-201ENST00000602422 811 ntBASIC14.65□□□□□ -0.06
LIM2P55344 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.65□□□□□ -0.06
LIM2P55344 AL662799.1-202ENST00000614205 422 ntBASIC14.65□□□□□ -0.06
LIM2P55344 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.65□□□□□ -0.06
LIM2P55344 AC007431.3-201ENST00000623221 587 ntBASIC14.65□□□□□ -0.06
LIM2P55344 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.65□□□□□ -0.06
LIM2P55344 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIM2P55344 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIM2P55344 AGAP7P-201ENST00000582299 2062 ntBASIC14.65□□□□□ -0.06
LIM2P55344 AGAP14-201ENST00000624701 2060 ntBASIC14.65□□□□□ -0.06
LIM2P55344 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIM2P55344 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIM2P55344 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIM2P55344 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIM2P55344 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LIM2P55344 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.65□□□□□ -0.06
LIM2P55344 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
LIM2P55344 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIM2P55344 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LIM2P55344 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.65□□□□□ -0.06
LIM2P55344 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIM2P55344 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LIM2P55344 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIM2P55344 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
LIM2P55344 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
LIM2P55344 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
LIM2P55344 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
LIM2P55344 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
LIM2P55344 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.64□□□□□ -0.07
LIM2P55344 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.64□□□□□ -0.07
LIM2P55344 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 MYCLP2-201ENST00000449268 967 ntBASIC14.64□□□□□ -0.07
LIM2P55344 RPL13AP25-201ENST00000484130 612 ntBASIC14.64□□□□□ -0.07
LIM2P55344 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.64□□□□□ -0.07
LIM2P55344 AC140912.1-201ENST00000577171 1054 ntBASIC14.64□□□□□ -0.07
LIM2P55344 BRI3BPP1-201ENST00000594224 787 ntBASIC14.64□□□□□ -0.07
LIM2P55344 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
LIM2P55344 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
LIM2P55344 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.64□□□□□ -0.07
LIM2P55344 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
LIM2P55344 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
LIM2P55344 AC148477.4-201ENST00000613430 1793 ntBASIC14.64□□□□□ -0.07
LIM2P55344 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
LIM2P55344 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms