Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC15.18■□□□□ 0.02
CXCL12P48061 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC15.18■□□□□ 0.02
CXCL12P48061 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC15.18■□□□□ 0.02
CXCL12P48061 AC114501.1-201ENST00000445949 172 ntBASIC15.18■□□□□ 0.02
CXCL12P48061 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC15.18■□□□□ 0.02
CXCL12P48061 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC15.18■□□□□ 0.02
CXCL12P48061 CDC23-208ENST00000505120 455 ntTSL 3 BASIC15.18■□□□□ 0.02
CXCL12P48061 AC116345.2-201ENST00000512837 523 ntBASIC15.18■□□□□ 0.02
CXCL12P48061 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
CXCL12P48061 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC15.18■□□□□ 0.02
CXCL12P48061 AL160314.3-201ENST00000556041 767 ntBASIC15.18■□□□□ 0.02
CXCL12P48061 SNORD3B-2-202ENST00000571722 791 ntBASIC15.18■□□□□ 0.02
CXCL12P48061 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CXCL12P48061 AC009955.4-201ENST00000597192 544 ntBASIC15.18■□□□□ 0.02
CXCL12P48061 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC15.18■□□□□ 0.02
CXCL12P48061 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC15.18■□□□□ 0.02
CXCL12P48061 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC15.18■□□□□ 0.02
CXCL12P48061 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL12P48061 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL12P48061 AC069224.1-201ENST00000566372 1715 ntBASIC15.17■□□□□ 0.02
CXCL12P48061 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL12P48061 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CXCL12P48061 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL12P48061 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.17■□□□□ 0.02
CXCL12P48061 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL12P48061 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CXCL12P48061 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL12P48061 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL12P48061 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CXCL12P48061 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.17■□□□□ 0.02
CXCL12P48061 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.17■□□□□ 0.02
CXCL12P48061 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL12P48061 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL12P48061 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC15.17■□□□□ 0.02
CXCL12P48061 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL12P48061 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL12P48061 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC15.17■□□□□ 0.02
CXCL12P48061 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC15.17■□□□□ 0.02
CXCL12P48061 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC15.17■□□□□ 0.02
CXCL12P48061 AC242376.1-201ENST00000559033 726 ntBASIC15.17■□□□□ 0.02
CXCL12P48061 DUX4L46-201ENST00000566845 751 ntBASIC15.17■□□□□ 0.02
CXCL12P48061 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL12P48061 IRF3-215ENST00000596822 823 ntTSL 3 BASIC15.17■□□□□ 0.02
CXCL12P48061 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC15.17■□□□□ 0.02
CXCL12P48061 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC15.17■□□□□ 0.02
CXCL12P48061 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL12P48061 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL12P48061 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL12P48061 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL12P48061 AC011676.5-201ENST00000624864 2660 ntBASIC15.17■□□□□ 0.02
CXCL12P48061 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL12P48061 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL12P48061 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL12P48061 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CXCL12P48061 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL12P48061 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC15.16■□□□□ 0.02
CXCL12P48061 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
CXCL12P48061 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
CXCL12P48061 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
CXCL12P48061 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
CXCL12P48061 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL12P48061 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.16■□□□□ 0.02
CXCL12P48061 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL12P48061 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL12P48061 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL12P48061 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CXCL12P48061 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL12P48061 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC15.16■□□□□ 0.02
CXCL12P48061 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL12P48061 RN7SL181P-201ENST00000462921 277 ntBASIC15.16■□□□□ 0.02
CXCL12P48061 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC15.16■□□□□ 0.02
CXCL12P48061 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL12P48061 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
CXCL12P48061 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC15.16■□□□□ 0.02
CXCL12P48061 MIR4783-201ENST00000580343 82 ntBASIC15.16■□□□□ 0.02
CXCL12P48061 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL12P48061 AL132994.2-201ENST00000603120 687 ntBASIC15.16■□□□□ 0.02
CXCL12P48061 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC15.16■□□□□ 0.02
CXCL12P48061 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL12P48061 SHC1P1-201ENST00000425230 1745 ntBASIC15.16■□□□□ 0.02
CXCL12P48061 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC15.16■□□□□ 0.02
CXCL12P48061 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.16■□□□□ 0.02
CXCL12P48061 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
CXCL12P48061 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CXCL12P48061 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL12P48061 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL12P48061 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15.16■□□□□ 0.02
CXCL12P48061 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL12P48061 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL12P48061 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL12P48061 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL12P48061 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms