Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.15■□□□□ 0.02
SHMT2P34897 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.15■□□□□ 0.02
SHMT2P34897 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHMT2P34897 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SHMT2P34897 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHMT2P34897 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHMT2P34897 CLK3P2-201ENST00000427566 1453 ntBASIC15.15■□□□□ 0.02
SHMT2P34897 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHMT2P34897 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHMT2P34897 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SHMT2P34897 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SHMT2P34897 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
SHMT2P34897 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.15■□□□□ 0.02
SHMT2P34897 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC15.15■□□□□ 0.02
SHMT2P34897 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.15■□□□□ 0.02
SHMT2P34897 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHMT2P34897 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
SHMT2P34897 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.15■□□□□ 0.02
SHMT2P34897 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.15■□□□□ 0.02
SHMT2P34897 MYCLP2-201ENST00000449268 967 ntBASIC15.15■□□□□ 0.02
SHMT2P34897 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.15■□□□□ 0.02
SHMT2P34897 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC15.15■□□□□ 0.02
SHMT2P34897 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC15.15■□□□□ 0.02
SHMT2P34897 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.15■□□□□ 0.02
SHMT2P34897 AC025048.6-201ENST00000634326 1161 ntBASIC15.15■□□□□ 0.02
SHMT2P34897 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHMT2P34897 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
SHMT2P34897 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.15■□□□□ 0.02
SHMT2P34897 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHMT2P34897 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SHMT2P34897 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHMT2P34897 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHMT2P34897 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHMT2P34897 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SHMT2P34897 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHMT2P34897 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.15■□□□□ 0.02
SHMT2P34897 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHMT2P34897 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.15■□□□□ 0.02
SHMT2P34897 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.15■□□□□ 0.02
SHMT2P34897 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHMT2P34897 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHMT2P34897 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SHMT2P34897 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
SHMT2P34897 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
SHMT2P34897 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SHMT2P34897 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHMT2P34897 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHMT2P34897 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.14■□□□□ 0.01
SHMT2P34897 TCAF2P1-201ENST00000291129 2421 ntBASIC15.14■□□□□ 0.01
SHMT2P34897 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHMT2P34897 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.14■□□□□ 0.01
SHMT2P34897 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
SHMT2P34897 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
SHMT2P34897 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHMT2P34897 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
SHMT2P34897 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHMT2P34897 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SHMT2P34897 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHMT2P34897 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHMT2P34897 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHMT2P34897 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SHMT2P34897 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC15.14■□□□□ 0.01
SHMT2P34897 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.14■□□□□ 0.01
SHMT2P34897 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SHMT2P34897 RPL13AP25-201ENST00000484130 612 ntBASIC15.14■□□□□ 0.01
SHMT2P34897 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC15.14■□□□□ 0.01
SHMT2P34897 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.14■□□□□ 0.01
SHMT2P34897 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.14■□□□□ 0.01
SHMT2P34897 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHMT2P34897 AC127383.1-201ENST00000444697 1800 ntBASIC15.14■□□□□ 0.01
SHMT2P34897 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHMT2P34897 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHMT2P34897 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHMT2P34897 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHMT2P34897 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHMT2P34897 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHMT2P34897 AL359258.3-201ENST00000622910 2331 ntBASIC15.14■□□□□ 0.01
SHMT2P34897 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHMT2P34897 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHMT2P34897 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHMT2P34897 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHMT2P34897 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.13■□□□□ 0.01
SHMT2P34897 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.13■□□□□ 0.01
SHMT2P34897 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC15.13■□□□□ 0.01
SHMT2P34897 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHMT2P34897 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHMT2P34897 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHMT2P34897 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SHMT2P34897 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
SHMT2P34897 EDF1-203ENST00000371649 790 ntTSL 2 BASIC15.13■□□□□ 0.01
SHMT2P34897 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
SHMT2P34897 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
SHMT2P34897 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHMT2P34897 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHMT2P34897 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHMT2P34897 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.13■□□□□ 0.01
SHMT2P34897 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SHMT2P34897 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC15.13■□□□□ 0.01
SHMT2P34897 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHMT2P34897 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms