Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CKS2P33552 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC11.43□□□□□ -0.58
CKS2P33552 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CKS2P33552 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CKS2P33552 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC11.43□□□□□ -0.58
CKS2P33552 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CKS2P33552 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC11.43□□□□□ -0.58
CKS2P33552 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CKS2P33552 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CKS2P33552 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
CKS2P33552 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CKS2P33552 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC11.43□□□□□ -0.58
CKS2P33552 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
CKS2P33552 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CKS2P33552 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CKS2P33552 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CKS2P33552 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
CKS2P33552 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC11.43□□□□□ -0.58
CKS2P33552 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
CKS2P33552 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
CKS2P33552 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
CKS2P33552 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
CKS2P33552 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
CKS2P33552 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 CACNA1G-229ENST00000514181 6795 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC11.42□□□□□ -0.58
CKS2P33552 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC11.42□□□□□ -0.58
CKS2P33552 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
CKS2P33552 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC11.42□□□□□ -0.58
CKS2P33552 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 ACE3P-201ENST00000423435 1973 ntBASIC11.42□□□□□ -0.58
CKS2P33552 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC11.42□□□□□ -0.58
CKS2P33552 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC11.42□□□□□ -0.58
CKS2P33552 SCARNA2-201ENST00000458748 420 ntBASIC11.42□□□□□ -0.58
CKS2P33552 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC11.42□□□□□ -0.58
CKS2P33552 DUX4L26-201ENST00000489078 1255 ntBASIC11.42□□□□□ -0.58
CKS2P33552 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC11.42□□□□□ -0.58
CKS2P33552 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC11.42□□□□□ -0.58
CKS2P33552 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC11.42□□□□□ -0.58
CKS2P33552 AL031432.2-201ENST00000566714 459 ntBASIC11.42□□□□□ -0.58
CKS2P33552 AC002347.1-201ENST00000569543 541 ntBASIC11.42□□□□□ -0.58
CKS2P33552 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC11.42□□□□□ -0.58
CKS2P33552 AL928711.1-201ENST00000570165 459 ntBASIC11.42□□□□□ -0.58
CKS2P33552 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC11.42□□□□□ -0.58
CKS2P33552 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC11.42□□□□□ -0.58
CKS2P33552 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC11.42□□□□□ -0.58
CKS2P33552 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 BCL2L11-221ENST00000621302 5224 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
CKS2P33552 BCL2L11-222ENST00000622509 5231 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
CKS2P33552 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC11.42□□□□□ -0.58
CKS2P33552 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC11.42□□□□□ -0.58
CKS2P33552 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 USP6NL-205ENST00000609104 11377 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
CKS2P33552 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC11.42□□□□□ -0.58
CKS2P33552 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC11.42□□□□□ -0.58
CKS2P33552 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC11.42□□□□□ -0.58
CKS2P33552 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC11.42□□□□□ -0.58
CKS2P33552 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
CKS2P33552 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CKS2P33552 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC11.41□□□□□ -0.58
CKS2P33552 PAN3-AS1-201ENST00000563843 1351 ntBASIC11.41□□□□□ -0.58
CKS2P33552 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC11.41□□□□□ -0.58
CKS2P33552 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CKS2P33552 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CKS2P33552 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CKS2P33552 ARHGAP31-201ENST00000264245 9317 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CKS2P33552 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC11.41□□□□□ -0.58
CKS2P33552 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC11.41□□□□□ -0.58
CKS2P33552 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CKS2P33552 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
CKS2P33552 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC11.41□□□□□ -0.58
CKS2P33552 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CKS2P33552 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CKS2P33552 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CKS2P33552 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CKS2P33552 PDE4DIP-227ENST00000529945 8824 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CKS2P33552 AC113367.3-201ENST00000508316 1912 ntBASIC11.41□□□□□ -0.58
CKS2P33552 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CKS2P33552 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CKS2P33552 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CKS2P33552 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms