Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC12.04□□□□□ -0.48
CXCL1P09341 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC12.04□□□□□ -0.48
CXCL1P09341 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
CXCL1P09341 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC12.04□□□□□ -0.48
CXCL1P09341 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC12.04□□□□□ -0.48
CXCL1P09341 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC12.04□□□□□ -0.48
CXCL1P09341 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC12.04□□□□□ -0.48
CXCL1P09341 BET1L-202ENST00000332865 533 ntTSL 5 BASIC12.04□□□□□ -0.48
CXCL1P09341 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC12.04□□□□□ -0.48
CXCL1P09341 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC12.04□□□□□ -0.48
CXCL1P09341 PTCHD3P3-201ENST00000403073 906 ntBASIC12.04□□□□□ -0.48
CXCL1P09341 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC12.04□□□□□ -0.48
CXCL1P09341 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC12.04□□□□□ -0.48
CXCL1P09341 MSRA-206ENST00000521209 814 ntTSL 3 BASIC12.04□□□□□ -0.48
CXCL1P09341 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC12.04□□□□□ -0.48
CXCL1P09341 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC12.04□□□□□ -0.48
CXCL1P09341 WT1-AS_2.1-201ENST00000613208 137 ntBASIC12.04□□□□□ -0.48
CXCL1P09341 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC12.04□□□□□ -0.48
CXCL1P09341 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC12.04□□□□□ -0.48
CXCL1P09341 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC12.04□□□□□ -0.48
CXCL1P09341 ATP2C2-AS1-201ENST00000565700 2998 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC12.04□□□□□ -0.48
CXCL1P09341 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC12.04□□□□□ -0.48
CXCL1P09341 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC12.04□□□□□ -0.48
CXCL1P09341 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC12.04□□□□□ -0.48
CXCL1P09341 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC12.04□□□□□ -0.48
CXCL1P09341 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
CXCL1P09341 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CXCL1P09341 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC12.03□□□□□ -0.48
CXCL1P09341 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
CXCL1P09341 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC12.03□□□□□ -0.48
CXCL1P09341 WASH6P-202ENST00000359512 1437 ntBASIC12.03□□□□□ -0.48
CXCL1P09341 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CXCL1P09341 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
CXCL1P09341 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC12.03□□□□□ -0.48
CXCL1P09341 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CXCL1P09341 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC12.03□□□□□ -0.48
CXCL1P09341 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC12.03□□□□□ -0.48
CXCL1P09341 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC12.03□□□□□ -0.48
CXCL1P09341 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
CXCL1P09341 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CXCL1P09341 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
CXCL1P09341 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CXCL1P09341 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
CXCL1P09341 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
CXCL1P09341 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CXCL1P09341 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
CXCL1P09341 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC12.03□□□□□ -0.48
CXCL1P09341 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
CXCL1P09341 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC12.03□□□□□ -0.48
CXCL1P09341 GNG12-AS1-201ENST00000413628 2058 ntTSL 2 BASIC12.03□□□□□ -0.48
CXCL1P09341 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
CXCL1P09341 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC12.03□□□□□ -0.48
CXCL1P09341 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CXCL1P09341 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CXCL1P09341 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CXCL1P09341 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
CXCL1P09341 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CXCL1P09341 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC12.03□□□□□ -0.48
CXCL1P09341 AC211429.1-201ENST00000415277 523 ntBASIC12.03□□□□□ -0.48
CXCL1P09341 VMO1-203ENST00000416307 712 ntTSL 2 BASIC12.03□□□□□ -0.48
CXCL1P09341 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC12.03□□□□□ -0.48
CXCL1P09341 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
CXCL1P09341 AP000867.3-201ENST00000524675 377 ntBASIC12.03□□□□□ -0.48
CXCL1P09341 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC12.03□□□□□ -0.48
CXCL1P09341 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC12.03□□□□□ -0.48
CXCL1P09341 MIR3180-1-201ENST00000580374 94 ntBASIC12.03□□□□□ -0.48
CXCL1P09341 MIR3180-3-201ENST00000584616 94 ntBASIC12.03□□□□□ -0.48
CXCL1P09341 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CXCL1P09341 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC12.03□□□□□ -0.48
CXCL1P09341 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC12.03□□□□□ -0.48
CXCL1P09341 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CXCL1P09341 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
CXCL1P09341 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC12.03□□□□□ -0.48
CXCL1P09341 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC12.03□□□□□ -0.48
CXCL1P09341 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
CXCL1P09341 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CXCL1P09341 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
CXCL1P09341 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CXCL1P09341 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CXCL1P09341 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC12.03□□□□□ -0.48
CXCL1P09341 PCDHGB8P-201ENST00000502926 1973 ntBASIC12.03□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms