Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SEMA3DO95025 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SEMA3DO95025 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SEMA3DO95025 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SEMA3DO95025 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
SEMA3DO95025 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.86□□□□□ -0.03
SEMA3DO95025 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SEMA3DO95025 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SEMA3DO95025 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.86□□□□□ -0.03
SEMA3DO95025 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.86□□□□□ -0.03
SEMA3DO95025 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
SEMA3DO95025 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.86□□□□□ -0.03
SEMA3DO95025 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
SEMA3DO95025 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC14.86□□□□□ -0.03
SEMA3DO95025 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.86□□□□□ -0.03
SEMA3DO95025 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.86□□□□□ -0.03
SEMA3DO95025 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
SEMA3DO95025 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SEMA3DO95025 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC14.86□□□□□ -0.03
SEMA3DO95025 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.86□□□□□ -0.03
SEMA3DO95025 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.86□□□□□ -0.03
SEMA3DO95025 AC000095.1-201ENST00000603208 874 ntBASIC14.86□□□□□ -0.03
SEMA3DO95025 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC14.86□□□□□ -0.03
SEMA3DO95025 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SEMA3DO95025 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
SEMA3DO95025 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
SEMA3DO95025 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.86□□□□□ -0.03
SEMA3DO95025 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.86□□□□□ -0.03
SEMA3DO95025 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
SEMA3DO95025 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
SEMA3DO95025 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SEMA3DO95025 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SEMA3DO95025 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SEMA3DO95025 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
SEMA3DO95025 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SEMA3DO95025 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SEMA3DO95025 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SEMA3DO95025 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.85□□□□□ -0.03
SEMA3DO95025 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.85□□□□□ -0.03
SEMA3DO95025 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.85□□□□□ -0.03
SEMA3DO95025 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SEMA3DO95025 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC14.85□□□□□ -0.03
SEMA3DO95025 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SEMA3DO95025 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SEMA3DO95025 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.85□□□□□ -0.03
SEMA3DO95025 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SEMA3DO95025 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.85□□□□□ -0.03
SEMA3DO95025 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SEMA3DO95025 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SEMA3DO95025 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SEMA3DO95025 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SEMA3DO95025 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SEMA3DO95025 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC14.85□□□□□ -0.03
SEMA3DO95025 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.85□□□□□ -0.03
SEMA3DO95025 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.85□□□□□ -0.03
SEMA3DO95025 GHSR-202ENST00000427970 912 ntBASIC14.85□□□□□ -0.03
SEMA3DO95025 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.85□□□□□ -0.03
SEMA3DO95025 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.85□□□□□ -0.03
SEMA3DO95025 TIMM17BP1-201ENST00000545713 516 ntBASIC14.85□□□□□ -0.03
SEMA3DO95025 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.85□□□□□ -0.03
SEMA3DO95025 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.85□□□□□ -0.03
SEMA3DO95025 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.85□□□□□ -0.03
SEMA3DO95025 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.85□□□□□ -0.03
SEMA3DO95025 AL390754.1-201ENST00000619088 582 ntBASIC14.85□□□□□ -0.03
SEMA3DO95025 AC004461.2-201ENST00000629517 803 ntBASIC14.85□□□□□ -0.03
SEMA3DO95025 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SEMA3DO95025 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SEMA3DO95025 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SEMA3DO95025 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.85□□□□□ -0.03
SEMA3DO95025 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.85□□□□□ -0.03
SEMA3DO95025 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.85□□□□□ -0.03
SEMA3DO95025 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC14.85□□□□□ -0.03
SEMA3DO95025 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
SEMA3DO95025 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SEMA3DO95025 AC023024.2-201ENST00000623561 1993 ntBASIC14.85□□□□□ -0.03
SEMA3DO95025 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.85□□□□□ -0.03
SEMA3DO95025 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.85□□□□□ -0.03
SEMA3DO95025 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.85□□□□□ -0.03
SEMA3DO95025 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SEMA3DO95025 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SEMA3DO95025 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
SEMA3DO95025 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.85□□□□□ -0.03
SEMA3DO95025 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SEMA3DO95025 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.85□□□□□ -0.03
SEMA3DO95025 MROH4P-201ENST00000431302 1578 ntBASIC14.85□□□□□ -0.03
SEMA3DO95025 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.85□□□□□ -0.03
SEMA3DO95025 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
SEMA3DO95025 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SEMA3DO95025 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SEMA3DO95025 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
SEMA3DO95025 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.84□□□□□ -0.03
SEMA3DO95025 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.84□□□□□ -0.03
SEMA3DO95025 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
SEMA3DO95025 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms