Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 INTS4P2-202ENST00000614726 2019 ntBASIC14.54□□□□□ -0.08
LDB3O75112 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
LDB3O75112 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LDB3O75112 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
LDB3O75112 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LDB3O75112 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
LDB3O75112 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LDB3O75112 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LDB3O75112 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
LDB3O75112 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
LDB3O75112 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
LDB3O75112 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.53□□□□□ -0.08
LDB3O75112 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LDB3O75112 AC006486.2-201ENST00000624246 2199 ntBASIC14.53□□□□□ -0.08
LDB3O75112 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LDB3O75112 AC126365.1-201ENST00000578585 1514 ntBASIC14.53□□□□□ -0.08
LDB3O75112 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.53□□□□□ -0.08
LDB3O75112 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
LDB3O75112 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
LDB3O75112 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.53□□□□□ -0.08
LDB3O75112 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LDB3O75112 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LDB3O75112 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LDB3O75112 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.53□□□□□ -0.08
LDB3O75112 AC134915.1-201ENST00000426461 574 ntBASIC14.53□□□□□ -0.08
LDB3O75112 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.53□□□□□ -0.08
LDB3O75112 RPL13AP25-201ENST00000484130 612 ntBASIC14.53□□□□□ -0.08
LDB3O75112 AL359711.2-201ENST00000563105 872 ntBASIC14.53□□□□□ -0.08
LDB3O75112 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
LDB3O75112 TMEM261P1-201ENST00000604899 340 ntBASIC14.53□□□□□ -0.08
LDB3O75112 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.53□□□□□ -0.08
LDB3O75112 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
LDB3O75112 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
LDB3O75112 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LDB3O75112 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
LDB3O75112 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LDB3O75112 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LDB3O75112 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.53□□□□□ -0.08
LDB3O75112 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.53□□□□□ -0.08
LDB3O75112 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.53□□□□□ -0.08
LDB3O75112 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LDB3O75112 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LDB3O75112 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
LDB3O75112 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LDB3O75112 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LDB3O75112 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
LDB3O75112 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LDB3O75112 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
LDB3O75112 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
LDB3O75112 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LDB3O75112 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LDB3O75112 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.52□□□□□ -0.08
LDB3O75112 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
LDB3O75112 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.52□□□□□ -0.08
LDB3O75112 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LDB3O75112 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LDB3O75112 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LDB3O75112 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
LDB3O75112 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
LDB3O75112 AL359258.3-201ENST00000622910 2331 ntBASIC14.52□□□□□ -0.08
LDB3O75112 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.52□□□□□ -0.08
LDB3O75112 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.52□□□□□ -0.08
LDB3O75112 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LDB3O75112 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
LDB3O75112 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
LDB3O75112 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LDB3O75112 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC14.52□□□□□ -0.09
LDB3O75112 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.52□□□□□ -0.09
LDB3O75112 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC14.52□□□□□ -0.09
LDB3O75112 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
LDB3O75112 AL442647.2-201ENST00000429864 857 ntBASIC14.52□□□□□ -0.09
LDB3O75112 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LDB3O75112 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LDB3O75112 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.52□□□□□ -0.09
LDB3O75112 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
LDB3O75112 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.52□□□□□ -0.09
LDB3O75112 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.52□□□□□ -0.09
LDB3O75112 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
LDB3O75112 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.52□□□□□ -0.09
LDB3O75112 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.52□□□□□ -0.09
LDB3O75112 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LDB3O75112 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LDB3O75112 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LDB3O75112 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LDB3O75112 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.52□□□□□ -0.09
LDB3O75112 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LDB3O75112 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC14.52□□□□□ -0.09
LDB3O75112 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.52□□□□□ -0.09
LDB3O75112 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
LDB3O75112 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LDB3O75112 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LDB3O75112 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
LDB3O75112 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.51□□□□□ -0.09
LDB3O75112 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.51□□□□□ -0.09
LDB3O75112 AC023157.3-201ENST00000619086 2088 ntBASIC14.51□□□□□ -0.09
LDB3O75112 AC103702.1-201ENST00000548801 2630 ntBASIC14.51□□□□□ -0.09
LDB3O75112 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LDB3O75112 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms