Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH5O43196 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
MSH5O43196 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
MSH5O43196 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC21.8■■□□□ 1.08
MSH5O43196 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH5O43196 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH5O43196 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
MSH5O43196 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC21.79■■□□□ 1.08
MSH5O43196 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH5O43196 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH5O43196 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH5O43196 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
MSH5O43196 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH5O43196 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC21.79■■□□□ 1.08
MSH5O43196 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC21.79■■□□□ 1.08
MSH5O43196 CIB4-201ENST00000288861 773 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH5O43196 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
MSH5O43196 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC21.79■■□□□ 1.08
MSH5O43196 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC21.79■■□□□ 1.08
MSH5O43196 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH5O43196 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH5O43196 AL592447.1-201ENST00000447592 540 ntBASIC21.79■■□□□ 1.08
MSH5O43196 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC21.79■■□□□ 1.08
MSH5O43196 AC022441.1-201ENST00000512599 794 ntTSL 3 BASIC21.79■■□□□ 1.08
MSH5O43196 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC21.79■■□□□ 1.08
MSH5O43196 SFTA3-210ENST00000521945 1116 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH5O43196 CNIH1-207ENST00000557690 838 ntTSL 3 BASIC21.79■■□□□ 1.08
MSH5O43196 ZNF235-203ENST00000589248 532 ntTSL 3 BASIC21.79■■□□□ 1.08
MSH5O43196 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC21.79■■□□□ 1.08
MSH5O43196 SRP9-204ENST00000619790 377 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH5O43196 AL161645.1-201ENST00000622716 1255 ntBASIC21.79■■□□□ 1.08
MSH5O43196 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC21.79■■□□□ 1.08
MSH5O43196 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC21.79■■□□□ 1.08
MSH5O43196 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH5O43196 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MSH5O43196 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MSH5O43196 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH5O43196 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH5O43196 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH5O43196 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH5O43196 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
MSH5O43196 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH5O43196 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH5O43196 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC21.78■■□□□ 1.08
MSH5O43196 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
MSH5O43196 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC21.78■■□□□ 1.08
MSH5O43196 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC21.78■■□□□ 1.08
MSH5O43196 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
MSH5O43196 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH5O43196 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC21.78■■□□□ 1.08
MSH5O43196 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH5O43196 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC21.78■■□□□ 1.08
MSH5O43196 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
MSH5O43196 AC027514.1-201ENST00000588561 1603 ntBASIC21.78■■□□□ 1.08
MSH5O43196 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH5O43196 CFDP1-201ENST00000283882 1275 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH5O43196 TMED5-201ENST00000370280 750 ntTSL 2 BASIC21.78■■□□□ 1.08
MSH5O43196 RNU6-1320P-201ENST00000390838 107 ntBASIC21.78■■□□□ 1.08
MSH5O43196 RNU6-1269P-201ENST00000391139 107 ntBASIC21.78■■□□□ 1.08
MSH5O43196 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
MSH5O43196 Y_RNA.619-201ENST00000410951 90 ntBASIC21.78■■□□□ 1.08
MSH5O43196 COX5BP8-201ENST00000416911 349 ntBASIC21.78■■□□□ 1.08
MSH5O43196 AC074367.1-201ENST00000438685 1125 ntBASIC21.78■■□□□ 1.08
MSH5O43196 AC073911.1-202ENST00000443154 1151 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
MSH5O43196 RPL7P55-201ENST00000450522 746 ntBASIC21.78■■□□□ 1.08
MSH5O43196 NDUFA12P1-201ENST00000455914 406 ntBASIC21.78■■□□□ 1.08
MSH5O43196 RNU6-599P-201ENST00000459383 107 ntBASIC21.78■■□□□ 1.08
MSH5O43196 RNU6-1193P-201ENST00000459461 107 ntBASIC21.78■■□□□ 1.08
MSH5O43196 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC21.78■■□□□ 1.08
MSH5O43196 AC090114.3-201ENST00000479267 829 ntBASIC21.78■■□□□ 1.08
MSH5O43196 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC21.78■■□□□ 1.08
MSH5O43196 LINC01099-202ENST00000512527 578 ntTSL 2 BASIC21.78■■□□□ 1.08
MSH5O43196 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC21.78■■□□□ 1.08
MSH5O43196 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC21.78■■□□□ 1.08
MSH5O43196 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC21.78■■□□□ 1.08
MSH5O43196 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC21.78■■□□□ 1.08
MSH5O43196 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
MSH5O43196 CENPUP2-201ENST00000555897 1186 ntBASIC21.78■■□□□ 1.08
MSH5O43196 AC025580.1-201ENST00000559553 729 ntTSL 5 BASIC21.78■■□□□ 1.08
MSH5O43196 AC103982.1-201ENST00000561358 571 ntTSL 4 BASIC21.78■■□□□ 1.08
MSH5O43196 SPDYE22P-201ENST00000582158 798 ntBASIC21.78■■□□□ 1.08
MSH5O43196 AP003973.1-201ENST00000604639 691 ntBASIC21.78■■□□□ 1.08
MSH5O43196 ZNF761-205ENST00000613950 646 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
MSH5O43196 U6.42-201ENST00000618440 107 ntBASIC21.78■■□□□ 1.08
MSH5O43196 RNU6-368P-201ENST00000620928 107 ntBASIC21.78■■□□□ 1.08
MSH5O43196 RNU6-538P-201ENST00000622329 107 ntBASIC21.78■■□□□ 1.08
MSH5O43196 MS4A3-202ENST00000358152 1516 ntTSL 5 BASIC21.78■■□□□ 1.08
MSH5O43196 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH5O43196 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH5O43196 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC21.78■■□□□ 1.08
MSH5O43196 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
MSH5O43196 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH5O43196 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH5O43196 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC21.78■■□□□ 1.08
MSH5O43196 LSM8-201ENST00000249299 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH5O43196 LINC00115-201ENST00000473798 1317 ntBASIC21.78■■□□□ 1.08
MSH5O43196 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH5O43196 FLJ22447-202ENST00000556569 1312 ntTSL 2 BASIC21.78■■□□□ 1.08
MSH5O43196 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH5O43196 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms